BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935650
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:... 1262 0.0
> AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165403-19166949
REVERSE LENGTH=1327
Length=1327
Score = 1262 bits (683), Expect = 0.0
Identities = 771/813 (95%), Gaps = 8/813 (1%)
Strand=Plus/Plus
Query 12 TCCGATGAGATGAGACAAGGAGGAGAATATTCTCCGGCGATGATGTCATCAGATCCATTC 71
||||||||||||| | |||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 168 TCCGATGAGATGACAGAAGGTGGAGAATATTCTCCGGCGATGATGTCAGCAGAGCCATTC 227
Query 72 TTGACCATGAAGAAGATAAAGAAGAGCAATCACAACAAGAACAATCAGAGAAGGTTTAGC 131
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 228 TTGACCATGAAGAAGATGAAGAAGAGCAACCACAACAAGAACAATCAGAGAAGGTTTAGC 287
Query 132 GACGAGCAGATCAAGTCACTGGAGATGATGTTCGAGTCTGAGACAAGGCTTGAGCCAAGG 191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 288 GACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGG 347
Query 192 AAGAAGGTTCAACTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 251
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 407
Query 252 CAGAACAAGAGGGCTCGTTGGAAATCGAAGCAGCTCGAGACTGAGTACAACATTCTTAGA 311
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 408 CAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCTCAGA 467
Query 312 CAAAACTACGACAACTTAGCTTCTCAGTTTGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 371
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 CAAAACTACGACAACTTGGCTTCTCAGTTCGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 527
Query 372 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGATGCAGAAGAAGACTCAGGATGAGGAAAGG 431
||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||
Sbjct 528 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGGAAAGG 587
Query 432 CAGTGTTGTAGAGATCAAGCTGTGGTGGCTCTAAGCAGCACAGATCATGAATCAGAAAAC 491
|||||| || |||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 588 CAGTGTAGTGGAGATCAAGCGGTGGTTGCTCTAAGCAGCACACATCATGAATCAGAAAAC 647
Query 492 GAAGAGAACCGGAGGCGTGAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAG 551
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GAAGAGAACCGGAGGCGTAAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAT 707
Query 552 AAGGGTCACCATGGGGTTATGTGTGATCATAATCatgatgattatgatgatgatgatgat 611
|||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||
Sbjct 708 AAGGGTCATCATGGGGTTATGTGTGATC---ATC---ATGATTATGAAGATGATGATAAT 761
Query 612 gGTTACAATAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 671
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGTTATAGTAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 821
Query 672 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 881
Query 732 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGTGGGAT 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 882 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGCGGGAT 941
Query 792 TTTTGGTCATGAATGA-AATAAAGTAAAAACAA 823
||||||||||||| | |||||| | ||||||
Sbjct 942 TTTTGGTCATGAAA-ACAATAAACTCTAAACAA 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5