BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935657

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46735.1 | Symbols:  | unknown protein; Has 14 Blast hits to...   754    0.0  


> AT2G46735.1 | Symbols:  | unknown protein; Has 14 Blast hits 
to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:19204185-19205112 FORWARD 
LENGTH=928
Length=928

 Score =  754 bits (408),  Expect = 0.0
 Identities = 483/518 (93%), Gaps = 9/518 (2%)
 Strand=Plus/Plus

Query  6    AAATTCGGAGTTAATATGTGGATCGTGAAACCGGCGGCGATACCGGTTCAATGTC-TCAT  64
            ||| ||||||||| |||||||| |||||||||||||||||| |||||||||| || | ||
Sbjct  277  AAA-TCGGAGTTACTATGTGGACCGTGAAACCGGCGGCGATGCCGGTTCAATTTCAT-AT  334

Query  65   GAGACCAACCGTAGCAACCTCCGTCGGCTATTCACAGCCACCGCCGCATAATTACGACGG  124
            |||||| ||||||||||| ||||||| ||||||||||||||| || ||||||||||||||
Sbjct  335  GAGACCCACCGTAGCAACTTCCGTCGCCTATTCACAGCCACCACCACATAATTACGACGG  394

Query  125  AATCCACCGTCGATTCATTAACATTCCGACGAAATCGCAAACTTCCGAATCCGTCGGCGG  184
            |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct  395  AATCCACCGTCGATTCATTAACGTTCCGACGAAATCACAAACTTCCGAATCCGTCGGCGG  454

Query  185  ATTAGGCCAACAAATCCTCCTCCGCACCGCCGATTCGAACCCTAGTAAACCAATCCCGAA  244
            ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct  455  ATTAGGCCAACAAATCCTCCTCCGCACCGTCGATTCGAACCCAAGAAAACCAATCCCGAA  514

Query  245  GGAGA-AGGAGATTAGTGGATCAGACGTGCTCTGGGCGATTCAGAGAGCGACGGCTCAGA  303
            ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  GGAGACA-GAGATTAGCGGATCAGACGTGCTCTGGGCGATTCAGAGAGCGACGGCTCAGA  573

Query  304  GGAAGAGAACGAACGCCGGTAAAAAGAAGACGAAGAA--GA-TAAGAGGTGTGGAGTTAT  360
            |||||||||| ||||||||||||||||||||||||||  |  | || ||||||||| |||
Sbjct  574  GGAAGAGAACAAACGCCGGTAAAAAGAAGACGAAGAATCGGCTCAGCGGTGTGGAGCTAT  633

Query  361  CATCCTCTGCGGGTGAGTCCACTGGAGATAACGGTGTTGATTACAGTAACGTGGCGCCGT  420
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  634  CATCCTCTGCGGGCGAGCCCACTGGAGATAACGGTGTTGATTACAGTAACGTGACGCCGT  693

Query  421  TAAGGATCAAGAGTGATTGGGGACACAGATTAGAGGAATTCGAGAAGCTTCTCAAAGAGT  480
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  694  TAAGGATCAAGAGTGATTGGGGTCACAGATTAGAGGAATTCGAGAAGCTTCTCAAAGAGT  753

Query  481  TTCAAGACACTGAACTTTGACTTTGACCTTTTTCTCTT  518
            ||||| |||| ||||||||||||||||||||||| |||
Sbjct  754  TTCAAAACACGGAACTTTGACTTTGACCTTTTTC-CTT  790



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5