BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935661
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)... 1692 0.0
AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain prote... 420 2e-116
> AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr2:19220727-19222916
REVERSE LENGTH=1382
Length=1382
Score = 1692 bits (916), Expect = 0.0
Identities = 1062/1128 (94%), Gaps = 27/1128 (2%)
Strand=Plus/Plus
Query 8 AATCTCTTTGATGATGTCGAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 85 AATCTCTTTGATGATGTCAAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 144
Query 68 TCCTGGGTTTAGGTTTCATCCAACCGAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAA 127
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 145 TCCTGGGTTTAGGTTTCATCCGACCGAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAA 204
Query 128 AGTTAATAGCATCGAGATTGATCTTGATGTCATCCGCGACGTTGATCTCAACAAGCTCGA 187
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 205 AGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGA 264
Query 188 GCCTTGGGATATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GCCTTGGGACATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 324
Query 248 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 384
Query 308 CGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGGATTGG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 TGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGAATTGG 444
Query 368 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 504
Query 428 GATCATGCATGAATATAGACTCGATGACAACATTATCTCCCCTGAGGATGTCACCGTTCA 487
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 505 GATCATGCATGAATATAGACTCGATGACAACATTATTTCCCCCGAGGATGTCACCGTTCA 564
Query 488 TGAGGTGGTGAATATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 547
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGAGGTCGTGAGTATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 624
Query 548 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAATAGTCCAGTCGGAGGAGCTTCCCTGAG 607
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 625 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAACAGTCCCGTCGGAGGAGCTTCCCTGAG 684
Query 608 CGGCGGCGGAGACATGG-G--GACG---TCGTCTCAGATCTTCAACGAGGATACTCTCGA 661
|||||||||||| | | | |||| || |||||||||||||||||||||||||||||
Sbjct 685 CGGCGGCGGAGATACGCCGAAGACGACATCATCTCAGATCTTCAACGAGGATACTCTCGA 744
Query 662 GCAATTTCTTGAACTTATGGGGCGATCTTGTAAAGAAGAGCTAAATCTTGACTCTTTCAT 721
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 745 CCAATTTCTTGAACTTATGGGGAGATCTTGTAAAGAAGAGCTAAATCTTGACCCTTTCAT 804
Query 722 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAAACAATCAACAACTGCCACGTAAGCTC 781
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 805 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAGGCAATCAACAACTGCCACGTAAGCTC 864
Query 782 TCCCGATACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTCGTTACTAG 841
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 865 TCCCGACACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTTGTTACTAG 924
Query 842 TTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCAACATCATATTCAAT 901
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 925 CTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCCACATCATATTCAAT 984
Query 902 CGCAGCCGTCGATGAAAGCCACGTGGATCAAGATCATCTCGC----C-TT--G-CC--T- 950
|||||||| |||| |||||||||| || ||||||||||| | || | || |
Sbjct 985 TACAGCCGTCAATGAGAGCCACGTGGGCCATGATCATCTCGCTTTGCCTTCCGTCCGATC 1044
Query 951 -----A-----GCCTGAACCGGTCCGCTTCGTACCACGCCGGTTTAACTCAGGAATATAC 1000
| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1045 TCCGTACCCCAGCCTAAACCGGTCCGCTTCGTACCACGCCGGTTTAACACAGGAATATAC 1104
Query 1001 ACTGGAGATGGAGCTCTGGAATACGACGACGTCGTCTCTACCGTCATCGCCTGGCCCATT 1060
|| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1105 ACCGGAGATGGAGCTATGGAATACGACGACGTCGTCTCTATCGTCATCGCCTGGCCCATT 1164
Query 1061 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1212
> AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain protein
66 | chr3:22929006-22930442 REVERSE LENGTH=1227
Length=1227
Score = 420 bits (227), Expect = 2e-116
Identities = 360/424 (85%), Gaps = 10/424 (2%)
Strand=Plus/Plus
Query 33 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCAACC 92
|||| ||||||||| |||||||| || ||||| |||||||| ||||||||||| ||||||
Sbjct 36 ATGAACATATCAGTAAACGGACAGTCACAAGTACCTCCTGGCTTTAGGTTTCACCCAACC 95
Query 93 GAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAAAGT-TAATAGCATCGAGATTGATCT 151
||||||||||| ||| ||||||| ||||| |||||| | | || |||| |||| |||||
Sbjct 96 GAGGAAGAGCTCTTGAAGTATTACCTCCGCAAGAAAATCT-CTAACATCAAGATCGATCT 154
Query 152 TGATGTCA-TCCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 210
||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CGATGTTATTCC-TGACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 213
Query 211 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTT-TAGCCACAAGGACAAAAAA 269
|||| || ||||| ||||| |||||||| ||||| || || |||||| |||||||| ||
Sbjct 214 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTT-TTATAGCCATAAGGACAAGAAG 272
Query 270 TATCCGAC-GGGAACGAGAACTAACAGAGCCACTGCGGCCGGATTTTGGAAAGCAACTGG 328
||||| || |||| | ||||| ||||||||||| ||| ||||||||||||||| || ||
Sbjct 273 TATCCCACCGGGA-CTAGAACCAACAGAGCCACCACGGTCGGATTTTGGAAAGCGACGGG 331
Query 329 CCGCGACAAGATCATATATAGCAATGGCCG-TAGGATTGGGATGAGAAAGACTCTTGTTT 387
|| ||||||| |||||||| |||||| | ||| || |||||| ||||||| ||||| |
Sbjct 332 ACGTGACAAGACCATATATACCAATGGT-GATAGAATCGGGATGCGAAAGACGCTTGTCT 390
Query 388 TCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGAC 447
|||||||||| ||||| ||||| || || ||||| |||||||||||||| ||||||||||
Sbjct 391 TCTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGAC 450
Query 448 TCGA 451
||||
Sbjct 451 TCGA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5