BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935665
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1622 0.0
AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 370 2e-101
> AT2G46810.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:19239694-19242672 FORWARD
LENGTH=1415
Length=1415
Score = 1622 bits (878), Expect = 0.0
Identities = 1004/1063 (94%), Gaps = 15/1063 (1%)
Strand=Plus/Plus
Query 57 TGTTTGGATCAAAAATTGAATGTGAGAAGAAGCCTACAAGTTCAAGGAACTGTAGAGGAT 116
|||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 73 TGTTTGGACCAAAAAGTGAATGTGAGAAGAAGCCTACAAGTTCAAGAAACTGTAGAGGAT 132
Query 117 CATCAAAGCTTTGTCCTT---GAGGAAG---AGCAACTCTCAACTCCAAGCTTGCTGCAA 170
||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||
Sbjct 133 CATCAAAGCTTTGCCCTTGAAGAGGAAGAACAACAACTCTCAACTCCGAGCTTGCTGCAA 192
Query 171 GATACAACAATTCCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTCTCCGTTTTTG 230
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 193 GACACAACAATACCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTCACCGTTTTTG 252
Query 231 TCATTCAAAGACCCAAGCTTTCTAGCACTACTATCTCTCCAGACACTTGAAAAGCCTTGG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TCATTCAAAGACCCAAGCTTTCTAGCACTACTATCTCTCCAGACACTTGAAAAGCCTTGG 312
Query 291 GAACTCGAAAACTATCTCCCACATGAAGTTCCAGAGTTTCATTCACCGATCCATTCTGAA 350
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GAACTCGAAAACTACCTCCCACATGAAGTTCCAGAGTTTCATTCACCGATCCATTCTGAA 372
Query 351 ACTAACCACTACTATCATAACCCACCTTTGGAAGGGGCCAATGAAGCCATCTCAAGCAAA 410
|| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||| | ||
Sbjct 373 ACCAACCACTACTATCATAATCCATCTTTGGAAGGAGTCAATGAAGCCATCTCAAACCAA 432
Query 411 GAACTTCCATTCAACCCACTAGAGAATGCAAATCCAAGACGCAAGCGGAAAAACAACAAC 470
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 433 GAACTTCCATTCAACCCACTAGAGAATGCGCGTTCAAGACGCAAGCGGAAAAACAACAAC 492
Query 471 TTGGCAACATTGATGACCagagaaaagagaaagagaaggagaactaaaccaacaaagaac 530
|||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 493 TTGGCATCATTGATGACAAGAGAAAAGCGAAAGAGAAGAAGAACTAAACCAACAAAGAAC 552
Query 531 atagaagagattgagagtcaaagaaTGACACACATTGCGGTTGAACGAAACCGCAGACGC 590
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATAGAAGAGATAGAGAGTCAAAGAATGACACACATTGCGGTTGAACGAAACCGCAGACGC 612
Query 591 CAAATGAACGTTCATCTGAACTCACTCCGCTCCATCATTCCACCTTCATACATCCAAAGG 650
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 613 CAAATGAACGTTCATCTGAACTCACTCCGCTCCATCATTCCATCTTCATACATCCAGAGG 672
Query 651 GGAGACCAAGCGTCGATAGTAGGAGGAGCAATAGACTTCGTAAAGATCCTAGAGCAACAC 710
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GGAGACCAAGCGTCAATAGTAGGAGGAGCAATAGACTTCGTAAAGATCCTAGAGCAACAG 732
Query 711 TTGCAATCCCTTGAAGCACAAAAGAGAAGTCAACAGAGTGATGATAACAAAGAGCAAATT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTGCAATCCCTTGAAGCACAAAAGAGAAGTCAACAGAGTGATGATAACAAAGAGCAAATT 792
Query 771 CTAGAAC-T--CAG-----GGA-CATTTCGTCGAACAAGTTGCGTGCGAGTAGTAAAGAA 821
| |||| | ||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 793 CCAGAAGATAACAGTCTCAGGAACATTTCGTCGAACAAGTTGCGTGCGAGTAATAAAGAA 852
Query 822 GAACAAAGTAGCAAACTCAAAATCGAAGCCACAGTGATAGAGAGTCACGTCAATCTGAAA 881
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 853 GAACAAAGTAGCAAACTCAAAATCGAAGCCACAGTGATAGAGAGTCACGTCAACCTAAAA 912
Query 882 ATTCAATGCAGGAGGAAAGAAGGACAACTTCTCAGATCAATCATATTGCTGGAGAAACTT 941
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATTCAATGTACGAGGAAACAAGGACAACTTCTCAGATCAATCATATTGCTGGAGAAACTT 972
Query 942 CGATTCACTGTTCTTCATCTCAACATCACATCTCCGACCAATACATCTGTCTCTTATTCC 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CGATTCACTGTTCTTCATCTCAACATCACATCTCCGACCAATACATCTGTCTCTTATTCC 1032
Query 1002 TTCAACCTCAAGATGGAAGATGACTGCAATTTGGGATCAGCTGATGAGATAACGGCGGCG 1061
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1033 TTCAACCTCAAGATGGAAGATGAATGTAATTTGGGATCAGCGGATGAGATAACGGCGGCG 1092
Query 1062 ATTCGTCAGATTTTCGACAGCTGATTGATTAATCGAATTAAAA 1104
|||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1093 ATTCGTCAGATTTTCGACAGCTGATTGACTAATCCAAGTAAAA 1135
> AT3G61950.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:22939546-22941451 FORWARD
LENGTH=1311
Length=1311
Score = 370 bits (200), Expect = 2e-101
Identities = 720/958 (75%), Gaps = 88/958 (9%)
Strand=Plus/Plus
Query 177 ACAATTCCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTC-TCCGTTTTTGTCATT 235
||| ||||||||||||| |||||| |||||||||||||| || | ||||||| ||| |
Sbjct 251 ACAGTTCCATTTCTACAGATGCTG---CAAAGTGAAGACCCCTCAT-CGTTTTTTTCAAT 306
Query 236 CAAAGACCCAAGCTTTCTAG-CACTACTATCTCTCCAGACACTTGAA-AAGCCTTGGGAA 293
|||||| |||| |||||| | | ||||| ||||| || || | | || |||||||||||
Sbjct 307 CAAAGAGCCAAACTTTCT-GACGCTACTGTCTCTTCAAAC-CCTCAAGGAGCCTTGGGAA 364
Query 294 CTCGAAA-ACTATCTCCCACATGAAG-TTCCAGAGTTTCATTCACCGATCCATTCTGAAA 351
||||||| | ||||| ||| ||| | || || | |||||||||||| |||| ||||| |
Sbjct 365 CTCGAAAGA-TATCTTTCACTTGAGGATT-CACAATTTCATTCACCGGTCCAATCTGAGA 422
Query 352 CTAACCACTACTAT--CA-TAACC---C-ACCTTTG-GAAGGGGCCAATG-AA-GCCATC 401
| |||| || | || | | || | | || || || ||||| | || || |
Sbjct 423 CCAACCGCTTC-ATGGAAGGAGCCAATCAAGCTGTGTCAA---GCCAA-GAAATTCCCTT 477
Query 402 T---CAAGC-AA-A-GA-ACTTCC--ATTC-AAC-C--CACTAGAGAATGCAAATCCAAG 448
| ||||| || | || ||| || ||| | | | ||| | | |||| || ||||
Sbjct 478 TAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCACATTCAAG 537
Query 449 ACGCAAGCGGAAAAACAACAACTTG--GCAAC-ATTGATGACCagagaaaagagaaagag 505
||| ||||| |||| |||| ||||| || | | ||||| |||||||||||||||||
Sbjct 538 ACGAAAGCGCAAAATCAACCACTTGCTGCCTCAAGAAATGACTAGAGAAAAGAGAAAGAG 597
Query 506 aaggagaactaaaccaa-caaagaac-atagaagagattgagagtcaaagaaTGACA-CA 562
|||| ||| ||||||| ||| ||| || ||||||||||||| ||||||||| | | ||
Sbjct 598 GAGGAAAACAAAACCAAGTAAA-AACAAT-GAAGAGATTGAGAATCAAAGAAT-AAACCA 654
Query 563 CATTGCGGTTGAACGAAACCGCAGACGCCAAATGAACGTTCATCTGAACTCACTCC--GC 620
|||||| |||||||||||| | ||||| |||||||||| ||| | ||||| |||| ||
Sbjct 655 CATTGCTGTTGAACGAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGC 714
Query 621 TCCATCATTCCACCTTCATACATCCAAAGGGGAGACCAAGCGTCGATAGTAGGAGGAGCA 680
|| || | |||||||| ||||||||| | ||||||||||| || |||||||||||||||
Sbjct 715 -CCTTC-TCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGGAGCA 772
Query 681 ATAGACTTCGTAAAGATCCTAGAGCAACA-CTTGCAATCCCTTGAAGCACAAAAGAGAA- 738
||| ||| ||| ||| |||| |||||| | | | ||||| || ||| | ||||||||||
Sbjct 773 ATAAACTACGTGAAGGTCCTCGAGCAA-ATCATACAATCTCTCGAATCGCAAAAGAGAAC 831
Query 739 G--TCAACAGAGT--GA-TGA--TA--ACAAAGA-GCAAATT-CT-AGAACTCAGGGACA 786
| ||||| ||| | ||| || | ||| | || | || | | |||| || ||
Sbjct 832 GCAACAACAAAGTAACAGTGAGGTAGTAGAAA-ACGC-ACTTAATCATCTCTCA-GG-CA 887
Query 787 TTTCGTCGAACAAGTTGCGTGCGAGTAGTAAAGAAGAACAAAGTAGCAAACTCAAAATCG 846
||||||||||| | | ||| || | | ||||| |||| | | | | ||||||||
Sbjct 888 TTTCGTCGAACGACCT--GTG-GACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCG 944
Query 847 AAGCCACAGTGATAGAGAGTCACGTCAATCTGAAAATTCAATGCAG-GAGGAAAGAAGGA 905
|||| ||||||||| | | || |||| || ||| ||||||| | || |||| |||||
Sbjct 945 AAGCTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATG-TGAGAAGAAACAAGGA 1003
Query 906 CAACTTCTCAGATCAATCATATTGCTGGAGAAA-CTTCGATTCACTGTTCTTCATCTCAA 964
|||||||||| | |||||||| || || ||| ||| | |||||||||||||||||||
Sbjct 1004 CAACTTCTCAAAGGAATCATATCACTTGA-AAAGCTTAAACTCACTGTTCTTCATCTCAA 1062
Query 965 CATCACAT-CTCCGAC-CAATACATCTGTCTCTTATTCCTTCAACCTCAAGATGGAAGAT 1022
||||| | || || | | || | ||||| ||||||||||||||||||||||||||||||
Sbjct 1063 TATCAC-TACTTCGTCTC-ATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGAT 1120
Query 1023 GACTGCAATTTGG-GATCAGCTGATGAGATAACGGCGGC-GATTCGTCAGATTTTCGA 1078
|| ||| | || | | ||||| || ||||| |||||||| | ||| || |||||||||
Sbjct 1121 GAGTGCGACTTAGAG-TCAGCCGACGAGATTACGGCGGCTG-TTCATCGGATTTTCGA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5