BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935667
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 | ch... 2929 0.0
> AT2G46830.1 | Symbols: CCA1 | circadian clock associated 1 |
chr2:19245672-19248909 FORWARD LENGTH=2268
Length=2268
Score = 2929 bits (1586), Expect = 0.0
Identities = 1781/1873 (95%), Gaps = 22/1873 (1%)
Strand=Plus/Plus
Query 8 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAGGAGCTTAGTGATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAA 296
Query 68 GCCATATACGATAACGAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 127
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCCATATACGATAACAAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATAGATTCAT 356
Query 128 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAAAAGATTGAAGAACATGTAGCAACGAA 187
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 357 TGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGAACATGTAGCAACAAA 416
Query 188 AACTGCTGTTCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AACTGCTGTCCAGATAAGAAGTCACGCTCAGAAATTTTTCTCCAAGGTAGAGAAAGAGGC 476
Query 248 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGATATAGCTATTCCTCCTCCACGGCC 307
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCC 536
Query 308 TAAGCGTAAACCAAGCAATCCTTATCCTAGAAAGACGGGAAGTGGAA-GTATCCCGATGT 366
|||||||||||||| ||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 537 TAAGCGTAAACCAAACAATCCTTATCCTCGAAAGACGGGAAGTGGAACG-ATCCTTATGT 595
Query 367 TAACAGCGGGTGTGAATGATGGACAAGAGTCCCTTGGATCAGAAAAAGTGTCCCATCCTG 426
|| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 596 CAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTG 655
Query 427 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAATAATAATCTGCAGGAAG 486
||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 656 AGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAG-A-AA-ACTCTGCAGGAAG 712
Query 487 AAAACTGTTCAGATTGTTTCACTCATCAGTACCTCTCTGCTGCATCCTCCATGAATAAAA 546
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 ACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTCTGCTGCATCCTCCATGAATAAAA 772
Query 547 GTTCTATAGAGACATCAAATGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 606
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGG 832
Query 607 GAAGTCAGAATAACAGGATAAGAAAGGAGTCAAACTCAGAGAATTACTGTGATTTGAATG 666
||||||||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct 833 GAAGTCAGAATAACAGGGTAAGAAAGGAGTCAAACTC--------A----GATTTGAATG 880
Query 667 CAAAATCTCTAGAAACCGATAATGAGCAAGGACCTCAGACTTATCCAATGCGTATCCCTG 726
|||||||||| |||| || ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 881 CAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTG 940
Query 727 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGCTAGTGCCATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAG 1000
Query 787 ACAGTCATCCCCACATTGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 846
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCAA 1060
Query 847 CCCTTTTACAAACACCGGCTCTCTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 906
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1061 CCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTC 1120
Query 907 CCGATTCTAGTGGTAGCCCACCTGTTCAAGGGAACTCACCTCCGAATCTGGCTGCTATGG 966
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1121 CCGATTCTAGTGGTGGCTCACCTGTTCCAGGGAACTCACCTCCGAATCTGGCTGCCATGG 1180
Query 967 CCGCTGCCACTGTTGCAGCTGCAAGTGCTTGGTGGGCTGCCAATGGATTGTTACCTTTAT 1026
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1181 CCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTAT 1240
Query 1027 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCCG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GTGCTCCTCTTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCAT 1300
Query 1087 GTGATGTAGAGTACACAAAAACAAGCACTTTACAGCATGTTTCTGCGCAGAGCCGAGAGC 1146
|||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||
Sbjct 1301 GTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCAGAGCCGAGAGC 1360
Query 1147 AAGAACACTCTGAGGCATCAAAGGCTCGATCTTCATTGGACTCAGAGGA-GATTGAAAAT 1205
|||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1361 AAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATG-TTGAAAAT 1419
Query 1206 AAGAGTAAACCAGATTGTCATGAGCAGCCTTCTGCAACATCTGAGAGTGATGCAAAGGGT 1265
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1420 AAGAGTAAACCAGTTTGTCATGAGCAGCCTTCTGCAACACCTGAGAGTGATGCAAAGGGT 1479
Query 1266 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCTTCGTGTGGCTCAAACACTCCC 1325
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1480 TCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCG 1539
Query 1326 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAGAGGCAAGAGGATGGCACCAATGGT 1385
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1540 TCGAGTAGTGATGATGTTGAGGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGT 1599
Query 1386 GAGGTGAAAGAAATGAATGAAGACACTAATAATCCTCAAACTTCAGAGTCCAATGCACGC 1445
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1600 GAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCAATGCACGC 1659
Query 1446 CGCAGTAGAATCAGCTCCAATATAACCGATCCTTGGAAGTCTGTGTCTGACGAGGGTCGA 1505
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1660 CGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGA 1719
Query 1506 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTACTACCGCAAAGCTTTACATATCGAGAA 1565
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1720 ATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGCAAAGTTTTACATATCGAGAA 1779
Query 1566 GAACACAGAGAGGAGGaacaacaacaacaa---caaAGATATCCAATGGCACTTGATCTT 1622
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1780 GAACACAGAGAGGAAGAACAACAACAACAAGAACAAAGATATCCAATGGCACTTGATCTT 1839
Query 1623 AACTTCACAGCTCAGTTAACTCCAGTTGATGATCAAGAGGAGAGGAGAAACACAGGATTT 1682
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1840 AACTTCACAGCTCAGTTAACACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTT 1899
Query 1683 CTCGGAATCGGATTGGATGCTTCAAAGCTGATAAGTAGAGGAAGAACAGGTTTCAAACCA 1742
|| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1900 CTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGGTTTTAAACCA 1959
Query 1743 TATAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACACCAATCCTATCATT 1802
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1960 TACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATT 2019
Query 1803 CATGTGGAACAGAAAGACCCCAAACGGATGAGGTTGGAAAGTCAAGCTTCGACATGAAAC 1862
||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||| ||
Sbjct 2020 CATGTGGAACAGAAAGATCCCAAACGGATGCGGTTGGAAACTCAAGCTTCCACATGAGAC 2079
Query 1863 TCTATTTTCATCT 1875
|||||||||||||
Sbjct 2080 TCTATTTTCATCT 2092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5