BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935672
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46890.1 | Symbols: | Protein of unknown function (DUF1295)... 1646 0.0
> AT2G46890.1 | Symbols: | Protein of unknown function (DUF1295)
| chr2:19266733-19268170 REVERSE LENGTH=1151
Length=1151
Score = 1646 bits (891), Expect = 0.0
Identities = 972/1012 (96%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 1 TCAACGACTTATTCGAGAGAAAATGAATCGGAATCTTAGAAACGCCATTATTGCATTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 15 TCAACGACTTATTCGAGAGAAAATGAATCGGAATCTTAGAAACGCCATTGTCGCATTTCT 74
Query 61 TGCTCCACTTCCTTCTATCGTCTTCTACCTCACATTTCTCCGTAATCACTCTCCAGCCTC 120
||||||||||||||||||||| ||||||||||| |||||| ||||| ||||| || | ||
Sbjct 75 TGCTCCACTTCCTTCTATCGTATTCTACCTCACCTTTCTCAGTAATTACTCTTCATCTTC 134
Query 121 AGATTCAGAGCTCTCTTTC-ATTCATTCATGGTGTTTGAATCATCCCCTTCTATTAGCAA 179
|||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 135 CGATTCAGAGCTCTC-TTCTATTCAATCATGGTGTTTGAATCATCCTCTTCTATTAGCAA 193
Query 180 ACCTTCTCTTCTTCTTAAACGTCAATGTGCTCTTCTGGGTCATCGGTTTACTCCAATCCA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 194 ACCTTCTCTTCTTCTTAAACGTCAATGTGCTCTTCTGGGTCATCGGTTTACTCCAATCTA 253
Query 240 GCCACTGGATGATCGATGTGTATTGGACTGTGATACCTGTAATGCTGGTTCATTACTTCG 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 254 GCCACTGGATGATCGATGTGTATTGGACAGTGATACCTGTAATGCTGGTTCATTACTTCG 313
Query 300 CTTCGCATCCATTGGCACAGTACAATAAGTTGAGATCCATGATTGTCATAACTCTGACAT 359
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 CTTCGCATCCATTGTCACAGTACAATAAGCTGAGATCCATGATTGTCATAACTCTGACAT 373
Query 360 GGATTTGGAGCATTAGGTTGACTCATAACTACTTCCGGCGGGAAAATTGGGAATGGGGCG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 374 GGATTTGGAGCATTAGGTTGACTCATAACTACTTCCGGCGGGAAAATTGGGAATGGGGAG 433
Query 420 CTAGAGAAGACTGGAGGTTCAACGACTTACGGAAACAGTACGGGAAACACTGGTGGTGGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTAGAGAAGACTGGAGGTTCAACGACTTACGGAAACAGTACGGGAAACACTGGTGGTGGC 493
Query 480 TCTCCTTCTTCTCTGTCTACGTTTCTCAGCAGATCTTCCTCATTGGGATATGTCTGCCCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 494 TCTCCTTCTTCTCTGTCTACGTTTCTCAGCAGATCTTCCTCATTGGGATATGTCTGCCTT 553
Query 540 TATATGTCATCCATTCCGTTGATGCGCCACTAAACATCTGGGACTTCATTTCCTCGGCTA 599
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 554 TATATGTCATCCATTCCATTGATGAGCCACTAAACATCTGGGACTTCATTTCCTCGGCTA 613
Query 600 TCTGTTTGACGGGAATTGTCATGGCATACTACGCAGACACACAGCTTCACGAGTTTGTAA 659
|||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 614 TCTGTTTGACCGGAATCGTCATGGCGTACTTCGCAGACACACAGCTTCACGAGTTTGTAA 673
Query 660 CCGGAAACCAAAAACTCAAGGAGCAAGGAAAGCCTAAGATCCCCAATCTCGACACGGGTT 719
||||||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||||
Sbjct 674 CCGGAAACCAAAAGCTCAAGGAGCAAGGAAAGCCCAAAATCCCCAATCTGGACTCGGGTT 733
Query 720 TGTGGCATTACTCAAGACATCCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGG 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TGTGGCGTTACTCAAGACATCCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGG 793
Query 780 TCATATTTGCTTGGAACCTTGGTCAAGGATGGACTTTGATAGGTGCATTGGTCAATACTC 839
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 794 TCATATTTGCTTGGAACCTTGGTCAAGGGTGGACTTTGATTGGTGCATTGGTCAATACTC 853
Query 840 TGTGTTTGGTCTATGTAACAATTCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAG 899
||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 854 TGTGTCTGGTCTATGTAACGATCCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAG 913
Query 900 CTGAAGCTTATAGAGCATATCAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CTGAAGCTTATAGAGCATATCAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTC 973
Query 960 ATGTTGCTGCTACTAAAGACAAGAACACTTGACGAAGCTGTGATTAGTTTGT 1011
||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 974 ATGCTGCTGCTACTAAAGACAAGAACACTTGAAGAAGCTGTGATTAGTTTGT 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5