BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935675
Length=2152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46915.1 | Symbols: | Protein of unknown function (DUF3754)... 3480 0.0
> AT2G46915.1 | Symbols: | Protein of unknown function (DUF3754)
| chr2:19273899-19277773 REVERSE LENGTH=2312
Length=2312
Score = 3480 bits (1884), Expect = 0.0
Identities = 2077/2168 (96%), Gaps = 21/2168 (1%)
Strand=Plus/Plus
Query 1 GCTAAAGATTCAGATCCATTATGTTATCTCTTCGAAACCTCACTACTAGCTTCGTCGCTC 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 47 GCTAAAGATTCAGATTCATTATGTTATCTCTTCGAAACCTCACTACTAGCTTCGTCGCTC 106
Query 61 TTCCATCTCGATCTAAGCCGT--T-ATCGCCGTCTTTGCGTCGTCGGTTAGTTCGTTGTC 117
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 107 TTCCATCTCGATCTAAGCCGTCGTCGTCGCCGTCTTTGCGTCGTCGGTTAGTTCGTTGTC 166
Query 118 GACTTACGGATGCGGCAACTTTTGCACCTCTTGGTGTGGTCTCCGGAGAATCGGAACGAG 177
|||||||||| |||||||||||| ||||| ||| ||| || || |||||||||||| |||
Sbjct 167 GACTTACGGAGGCGGCAACTTTTTCACCTATTGATGTAGTTTCTGGAGAATCGGAAAGAG 226
Query 178 CGATTGGCAGCTTAACTGAGCTTAAAAACGGTGGTGGCTGGAAGGTGGAAGATGAGCTTC 237
|| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 227 CGGTTGGTAGCTTAACTGAGCTTAAAAACGGCGGTGGCTGGAAGGTGGAAGATGAGCTTC 286
Query 238 CCCCGGCGGAAGATGGACGTGAAGGAGGAGTAGAAGATGACGATTCggaggaggaggagg 297
|| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 287 CCTCGGCGGAAGATGGAGGTGAAGGAGGAGTAGAAGATGACGATTC---GGAGGAGGAGG 343
Query 298 aggGGATTTCGAGTATTCATGTTCCTCGTGAGAAATACATCAATGTCTCCAAGTCTGATC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGGGGATTTCGAGTATTCATGTTCCTCGTGAGAAATACATCAATGTCTCCAAGTCTGATC 403
Query 358 TCGTTAATGGTATTGTTACGACGCTCCTCGATTCTCAAGAC---GGAGACACTGATATCT 414
|||||||||||||||| |||| ||| ||||||||||||||| |||||| |||||||||
Sbjct 404 TCGTTAATGGTATTGTAACGAAGCTTCTCGATTCTCAAGACGGAGGAGACGCTGATATCT 463
Query 415 TCCTCCTCCTTTCCTCGTGCTTAGACTCTATCCTTCACGCGGAGCACAAGAGGATTTTAG 474
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 464 TCCTCCTCCTTTCCTCGTGCTTAGACTCTATCCTTCACGCGGAGCATAAGAGGATTTTAG 523
Query 475 AGCAAATGAGAGCCGATTTCGTCGCTACTCAGTCCCT------GGAGG------AGAACT 522
|||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 524 AGCAGATGAGAGCCGATTTCGTCGCTACTCAGTCCCTAGAGGAGGAGGAACTTAAGAACT 583
Query 523 CTGAACCTAGGAGTGTTAATGGATACGATGGTTTATCATTCCCTTTGGCTGATGGTTTCG 582
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 584 CTGAACCTAGGAGTGTTAATGGATACGAAGGTTTATCATTCCCTTTGGCTGATGGTTTCG 643
Query 583 ACATTTGGACCTTTTTAATTTCCTCTGGCAAACATGCAAAGAAACGTTCTGCTGAAAGTG 642
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 644 ACATTTGGAACTTTTTAATTTCCTCTGGCAAACATGCAAAGAAACGTTCCGCTGAAAGTG 703
Query 643 TAATGGCTGCAACCCGGTTCCAGCGTTCTTTCATTCAGCTCCTAGACAATGCCGGTTTTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TAATGGCTGCAACCCGGTTCCAGCGTTCTTTCATTCAGCTCCTAGACAATGCCGGTTTTG 763
Query 703 AAGAGCTTTCAGCTAGGGATTTGGCATTGACGTCGGCTCTGAACACGGATTACCTTCTTA 762
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 764 AAGAGCTTTCAGCTAGGGATTTGGCATTGACCTCGGCTCTTAACACGGATTACCTTCTTA 823
Query 763 CTTTGCCTGTATACGTTGATTGGAAGAAGGCATCAGAGTCTAATGCTATTGTTTTCAGGC 822
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 824 CTTTGCCTGTATATGTTGATTGGAAGAAGGCGTCAGAGTCCAATGCTATTGTTTTCAGGC 883
Query 823 GTGGATTTGCAACTGAGAAGGAGAAGGGTTTGTTACTTGTGGAGAAGCTAGACTATATCC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GTGGATTTGCAACTGAGAAGGAGAAGGGTTTGTTACTTGTGGAGAAGCTAGACTATATCC 943
Query 883 AGTCTAAAGTTCTACAAGGAATCTTCTCTACTATTGCAAAACCCTTGAGAAAAGTTGGAA 942
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AGTCTAAAGTTCTACAAGTAATCTTCTCTACTATTGCAAAACCCTTGAGAAAAGTTGGAA 1003
Query 943 AATTGATAAACAAGGCGTTAAGTGAGGCTTCTCAAACTCAAGAAATTCAAGATTTATCAG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AATTGATAAACAAGGCGTTAAGTGAGGCTTCTCAAACTCAAGAAATTCAAGATTTATCAG 1063
Query 1003 AGAGAATGAAAGTTTGGCTCAAGGACCTATCCCTTTTTAAGGAATCATATCTTGACCAAA 1062
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AGGGAATGAAAGTTTGGCTCAAGGACCTATCCCTTTTTAAGGAATCATATCTTGACCAAA 1123
Query 1063 CTTCTGATAATTTCTTGAAAGAGGGGTTCCTTCCAGATTCAGTCCTTCCCATGCGGTTAG 1122
|||||||||||||||||||||| || |||||||||||||| ||||| ||||||| |||||
Sbjct 1124 CTTCTGATAATTTCTTGAAAGATGGCTTCCTTCCAGATTCTGTCCTCCCCATGCAGTTAG 1183
Query 1123 CAGCACAAAGGGCGGTCAGTCGGTATGAGGGGCTTCTGACACCTGTTGGTCCTCGCGCAA 1182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1184 CAGCACAAAGGGCGGTCAGTCGATATGAGGGGCTTCTGACACCTGTTGGTCCTCGCGCAA 1243
Query 1183 AGCTCTTCAGAAAGTTGTTTGGTTGGATTGGTTTCATTTCTCCTGATTATGAAACACCAT 1242
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1244 AGCTCTTCAGAAAGTTGCTTGGATGGATTGGTTTCATTTCTCGTGATTATGAAACACCAT 1303
Query 1243 CTGAGCTAGCTAATGACAGTAATGCATCTGAACCTTATTTAAGGCCGATTTTCTTATCAA 1302
|| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1304 CTCAGCTAGCTAATGATAGTAGTTCATCTGAACCTTATTTAAGGCCGATTTTCTTATCAA 1363
Query 1303 GGATGACACTGGCTGATATATGGAAACCTGCTTCAAAGAAAGCTTGTGGAAATGATGTCT 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1364 GGATGACACTGGCTGATATATGGAAACCTGCTTCAAAGAAAGCTTGTGGAAATGATATCT 1423
Query 1363 GGAAAAGAATAAAAACTTCGATTTCCATTCTTTTATCACCTTCAACTCTGCAGGAGCCTG 1422
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GGAAAAGAATAAAAACTTCAATTTCCATTCTTTTATCACCTTCAACTCTGCAGGAGCCTG 1483
Query 1423 CATTTGAAGAACTAATTTTGCTTTACACGAAGGATGCAAGTGAAAAAGATGATAAGAATA 1482
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1484 CGTTTGAAGAGCTAATTTTGCTTTACACGAAGGATGCGAGTGAAAAAGATGATAAGAATA 1543
Query 1483 AAGATGAAACACGATCATCATTACAATTGGAGATATTTGAAAGAATTCCAATTCCAGATT 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AAGATGAAACACGATCATCATTACAATTGGAGATATTTGAAAGAATTCCAATTCCAGATT 1603
Query 1543 TACCTGTAATTTTCCCCCACAAGAAGCTTTACTTTCGCATCATAGATACAGTACGTTTGG 1602
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 TACCTGTAATTTTCCCTCACAAGAAGCTTTACTTTCGCATCATAGATACAGTACGTCTGG 1663
Query 1603 ATATTGCTAGTATTTTGGGACTTACGGCATACTTTGTAAACTACAAGTTTGAGAACATCT 1662
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ATATTGCTAGTATTCTGGGACTTACGGCATACTTTGTAAACTACAAGTTTGAGAACATCT 1723
Query 1663 CATCATCCCCATCAGCATTCTTTCTTGACGTGATCGCCGTCACAGCTCTGTTAATATATG 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1724 CATCATCCCCATCAGCATTCTTTCTTGACGTGATCGCCGTCACAGCTCTGGTAATATATG 1783
Query 1723 CAACACGCGTGGTTTTGGGTTACAAGCAGACATGGGATAGATATCAATTGTTAGTTAACA 1782
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1784 CAACACGAGTGGTTTTGGGTTACAAGCAGACATGGGATAGATATCAATTGCTAGTAAACA 1843
Query 1783 AGACACTTTATGAGAAAACCTTAGCCAGTGGCTTTGGTTCTGTCCATTTCCTTTTGGATG 1842
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1844 AGACACTTTATGAGAAAACCTTAGCCAGTGGCTTTGGCTCTGTCCATTTCCTATTGGATG 1903
Query 1843 CCTCGGAGCAGCAACAGTACAAGGAGGCAATATTGACATATGCAATCATTCTTCAAGCGG 1902
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1904 CCTCGGAGCAGCAACAGTACAAGGAGGCAATATTGACATATGCAATTATTCTCCAAGCGG 1963
Query 1903 GAAAAAATCAGAATATGTCTGATCAAGGAGTTCGCGATAGATGCGAGAGATTCATGTATG 1962
|||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||
Sbjct 1964 GAAAAAATCAGAATATGTCTTATAAAGGAGTTGGAGATAGATGCGAGAGATTCATGTATG 2023
Query 1963 ACACTTTCAAAATAAAGGTTGAGATGCGAGTAGAAAAAGCTATAAACACGTTGGTGAGAC 2022
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2024 ACACTTTCAAAATAAAGGTTGAGATGCGAGTAGAAAAAGCTATAAGCACGTTGGTGAGAC 2083
Query 2023 TTGGTCTAGTAACAGAGACACTGGTCGATAGCAACACCAAGCTACAGGCTGTTCCTTGTC 2082
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2084 TTGGTCTAGTAACAGAGACACTGGTCGATAGCAACACCAAGTTACAGGCTGTTCCTTGTC 2143
Query 2083 CTCAGGCTTATATTTCTCTTAAAGAACTATGGAGCAGTCTGCTTGGTTGAATACAGTCTG 2142
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2144 CTCAGGCTTATATATCTCTTAAAGAACTATGGAGCAGTCTGCTTGGTTGAATTCAGTCCG 2203
Query 2143 TGTTTGAA 2150
|| |||||
Sbjct 2204 TGGTTGAA 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106726358670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5