BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935681
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46960.2 | Symbols: CYP709B1 | cytochrome P450, family 709, ... 359 5e-98
> AT2G46960.2 | Symbols: CYP709B1 | cytochrome P450, family 709,
subfamily B, polypeptide 1 | chr2:19292049-19294260 REVERSE
LENGTH=1854
Length=1854
Score = 359 bits (194), Expect = 5e-98
Identities = 592/775 (76%), Gaps = 63/775 (8%)
Strand=Plus/Plus
Query 263 GAGAAACATTTCTCTACTGGAATGGAACAGAGCCGACGATATGCACCTCAGATCCTGAAC 322
|||| || ||||| |||||||| ||||||||||| | |||||||| ||||||||||||||
Sbjct 326 GAGAGACTTTTCTTTACTGGAACGGAACAGAGCCAAGGATATGCATCTCAGATCCTGAAC 385
Query 323 TAGCTAAACAA--ATCTTGTCGAGCAAGTTAGGTTT-TTCGGTTAGATCAAAGAG-GAGA 378
| || ||| || || ||||||| |||||||||||| || || | ||||||| | |||
Sbjct 386 TTGC-AAA-AACTATGTTGTCGAACAAGTTAGGTTTCTT-TGTCAAATCAAAG-GCAAGA 441
Query 379 CCGGA-GTTGCTCATATTTTTCGG-T--AAAGGACTT-TCCTTCTCTGAGGGTGCTGATT 433
|| || | || | | | || |||| | ||||||||| || || || || ||||||||||
Sbjct 442 CCTGAGGCTG-TTAAACTTGTCGGCTCCAAAGGACTTGTCTTTATC-GAAGGTGCTGATT 499
Query 434 GGGTTCGCCATAGAAGAATCTTGAACCCTGCATTCTCCA-CTGACCGGCTTAAGGTCATG 492
||||||||||||||||||||||||||||||| ||||||| | || |||| ||| |||||
Sbjct 500 GGGTTCGCCATAGAAGAATCTTGAACCCTGCTTTCTCCATC-GATAGGCTCAAGATCATG 558
Query 493 ACGAAA-TCGATGGTGGATTGCACATTGAGGATATTCGAGGAGTGGAGAAAACAGAACAA 551
|||| | |||||| ||||| || | | ||| || ||||||||||||||| ||| ||
Sbjct 559 ACGACCGT-GATGGTTGATTGTACGCTCAAGATGTTAGAGGAGTGGAGAAAAGAGAGCAC 617
Query 552 ATATG-AAGAAACAGAGCAAAATGT-GATGAAGATGGAGATGAA-GAAAGAGTTTTATCG 608
|| | ||||||||||||| | ||| || | ||| ||||| ||| ||||| | |
Sbjct 618 -TAAGGAAGAAACAGAGCACCC-GAAGATTAAAAAGGAAATGAACGAA-GAGTTCCAAAG 674
Query 609 ATTAACCGCTGATATTATAGCGACCACTGCGTTTGGAAGCAGTTACGCCGAAGGAAAT-G 667
| |||| |||||||| ||||| ||| ||||||||||||||||||||| |||||||| | |
Sbjct 675 ACTAACAGCTGATATAATAGCAACCTCTGCGTTTGGAAGCAGTTACGTCGAAGGAA-TCG 733
Query 668 AAATCTTTAGAGCACATGTAGAGCTTCGGAAT-TGTTGTGTTACTTCTGC-CA-CCAAAG 724
|| | |||||| |||| | |||||| || |||| | |||||| | || |||| |
Sbjct 734 AAGTGTTTAGATCACAAATGGAGCTTAA-AAGGTGTTATACAACTTCT-CTCAACCAA-G 790
Query 725 TGT-TCATCCAC-GGAAAACAGTACCTTCCTACACCTTTGAATC-TTCGTATATGGAAGC 781
| | | |||| | |||| |||||||||||||| |||| ||| | |||| |||||||||
Sbjct 791 TCTCT-ATCC-CTGGAACTCAGTACCTTCCTACGCCTTCGAA-CATTCGGGTATGGAAGC 847
Query 782 TCGATAGGAAAGTAAAGAAC--A-TGATCAGAAGAATCA-TT-GATACTAG-GCTAAAAT 835
| || |||||| | | ||| | | | |||| || | || || |||| | | |||
Sbjct 848 TGGAGAGGAAAATGGATAACTCAATTAAGAGAATTATAAGTTCGAGACTACAG-TCAAA- 905
Query 836 GGAAGAATCATGGAGATGATGATCTTCTAGGAATCATGTT-AAACGCTG-CAACCTCTGA 893
| ||| | ||||||| ||| ||||| |||||| |||| ||| ||| |||| ||||
Sbjct 906 GTCAGATT-ATGGAGACGAT---CTTCTCGGAATCTTGTTGAAA-GCTTACAACA-CTGA 959
Query 894 AGATCCCGAGAAA--AAGTTGAGCATAGATGAGATCATAGAAGAATGCAAAAATTTCTTC 951
|| | ||| ||| ||||||| || ||||||||| | ||||||| | |||||||
Sbjct 960 AGGGAA-G-GAACGGAAGATGAGCATCGAAGAGATCATACATGAATGCAGGACTTTCTTC 1017
Query 952 ATATC--AGGACACGGAACTACTTCGATTTTATTGGCATGGACTACGATGTTGCT 1004
| || ||| |||| ||||||||||| ||||||||||||||| |||||||||||
Sbjct 1018 -T-TCGGAGGTCACGAAACTACTTCGAATTTATTGGCATGGACAACGATGTTGCT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5