BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935682
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-... 1927 0.0
> AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor
3-like 1 | chr2:19295490-19297826 REVERSE LENGTH=1526
Length=1526
Score = 1927 bits (1043), Expect = 0.0
Identities = 1213/1294 (94%), Gaps = 15/1294 (1%)
Strand=Plus/Plus
Query 1 GCTTTGTTCAGTTCACTTCAATGGAAG-AAAAGCCCTTAGCATCATCATCATCTCAACCA 59
||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 129 GCTTTGTTCAGTTTACTTCAATGGAAGCAAAA-CCCTTAGCATCATCATCATCTGAACCA 187
Query 60 AACATGATTTCTCCATCATCAAGCTTTAAACCAAAATTAAAAGATCAAGATTATATGGAG 119
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 188 AACATGATTTCTCCATCATCAAACATTAAACCAAAATTAAAAGATGAAGATTATATGGAG 247
Query 120 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGGGTCGAAGA-CACAAGAACAACGGTTC 178
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 248 CTGGTGTGTGAAAATGGGCAGATTCTTGCAAAGATTCGAAGACCA-AAGAACAACGGTTC 306
Query 179 TTTTCAAAATCAACGTAGGCAATCTCTCTTGGATTTGTATGAGACCGAGTACAGTGAGGG 238
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 307 TTTTCAAAAGCAACGTAGGCAATCTCTCCTGGATTTGTATGAGACCGAGTACAGCGAGGG 366
Query 239 TTTCAAGAAAAACATCAAGAATCTTGGTGATACACAAGTTGTTCCTGTGAATGAGTCTCA 298
|||||||||||||||||||| |||||| || |||||||||||||| |||| | ||||| |
Sbjct 367 TTTCAAGAAAAACATCAAGATTCTTGGAGACACACAAGTTGTTCCGGTGAGTCAGTCTAA 426
Query 299 GCCACAACAAGATAAAGAAAACAATGAACATATG------AATAAGAAGAAGCTTAAGTC 352
|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||
Sbjct 427 GCCACAACAAGATAAAGAAACCAATGAACAAATGAACAACAATAAGAAGAAGCTAAAGTC 486
Query 353 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAACGTTTTGAATCATCAAC 412
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 487 CTCCAAAATCGAATTTGAGAGAAATGTTTCGAAAAGCAACAAATGTGTTGAATCATCAAC 546
Query 413 ATTAATTGATG-AT-T-CTAAAGGTCCAAAGAATGTTGAAGTTACTAGAACTCCTCCTGA 469
||||||||||| | | |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 547 ATTAATTGATGTTTCTGCTAAAGGTCCAAAGAATGTTGAAGTTACTACAGCTCCTCCTGA 606
Query 470 TGAGCAATCTGCAGCAGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGATGTT 529
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 607 TGAGCAATCTGCAGCTGTTGGTAGATCCACGGAATTGTATTTTGCTTCTTCATCGAAGTT 666
Query 530 TTCTCGAGGAACTTCGAGAGATCTAAGTT-TATGTTCTTTAAAGAGGAAGCATGGAGACA 588
||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |
Sbjct 667 TTCTCGAGGAACTTCGAGAGATCTAAGTTGT-TGTTCTTTAAAGAGGAAGTATGGAGATA 725
Query 589 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCCGATGATGAATCAGATGATGCGA 648
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 726 TTGAAGAAGAAGAATCAACCTATTTAAGTAATAATTCAGATGATGAATCAGATGATGCGA 785
Query 649 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAGAGAAAACGAAGCACAGAAG 708
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 786 AGACACAAGTTCATGCGAGAACAAGAAAGCCGGTGACTAAAAGAAAACGAAGCACAGAAG 845
Query 709 TATATAAGTTATATGAAAGAAAGCGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 768
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 846 TCCATAAGTTATATGAAAGAAAACGAAGAGATGAATTCAACAAGAAAATGCGTGCTTTGC 905
Query 769 AGGACATACTACCAAACTGTTACAAGGATGATAAGGCATCATTGTTGGATGAGGCTATCA 828
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 906 AGGACCTACTACCAAATTGTTACAAGGATGATAAGGCTTCATTGTTGGATGAGGCTATCA 965
Query 829 AATATATGAGGACCCTTCAACATCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAC 888
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 966 AATATATGCGGACCCTTCAACTTCAAGTTCAGATGATGAGTATGGGAAATGGATTAATAA 1025
Query 889 GACCACCTATGATGTTGCCAATGGGTCATTACCCTCCCATGGGTCTAGGAATGCATGTGG 948
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1026 GACCACCTACGATGTTGCCAATGGGTCATTACTCTCCCATGGGTCTAGGAATGCATATGG 1085
Query 949 GTGCAGCAGCAACACCAACATCAGTACCGCAATTCCTACCTATGAATGTTCAAGGAACCA 1008
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 1086 GTGCAGCAGCAACACCAACATCAATACCGCAATTCCTGCCTATGAATGTTCAAGCAACCG 1145
Query 1009 GTTTTCCCGGGATTAACAATGCATCATCACAAATGCTAAGCTTTCTTAATCACCCCACAG 1068
||||||| ||||| ||||||||| || |||||||||||||||||||||||||||| | |
Sbjct 1146 GTTTTCCGGGGATGAACAATGCACCACCACAAATGCTAAGCTTTCTTAATCACCCAAGTG 1205
Query 1069 GACTAATCCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCAATTCGTGG 1128
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1206 GACTAATTCCAAACACTCCTATCTTTTCTCCATTGGAAAATTGCTCTCAGCCATTCGTGG 1265
Query 1129 TGCCTTCGTGTGTTCCTCAGACTCATGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1188
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1266 TGCCTTCGTGTGTTTCTCAGACTCAGGCTACTTCTTTTACTCAATTCCCAAAGTCTGCGT 1325
Query 1189 CCACCTCAAACTTAGAAGATGCAATGCAGTATAGAGGAAGCAACGGTTATAGTTATTATC 1248
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1326 CCGCCTCAAACTTAGAAGATGCAATGCAATATAGAGGAAGCAACGGTTTTAGTTATTATC 1385
Query 1249 CCTCGCAAAACTAAAGATTTGTAGGTAGTTGATG 1282
||||| ||||||| ||||||||| ||||||||
Sbjct 1386 GCTCGCCAAACTAATGATTTGTAGAAAGTTGATG 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5