BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935685
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 209 1e-53
AT5G66658.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 167 9e-41
AT5G65610.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 150 9e-36
AT5G67245.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 139 2e-32
AT5G65609.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 134 9e-31
AT5G65575.1 | Symbols: | other RNA | chr5:26206845-26207913 RE... 124 6e-28
> AT5G65580.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: flower;
EXPRESSED DURING: petal differentiation and expansion stage;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26207654-26207962 FORWARD LENGTH=309
Length=309
Score = 209 bits (113), Expect = 1e-53
Identities = 146/160 (91%), Gaps = 10/160 (6%)
Strand=Plus/Minus
Query 18 TTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCTTTGA--TC 75
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 TTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCTTTGACCTC 247
Query 76 TCCTCTCAGTCGTCTCTCTCTC--GCAATCTCCGCCGTCGCTGTCGGTCTCAGGTTTCAT 133
|||||||||||||||||||||| || ||||||||||||| ||| | ||| ||||
Sbjct 246 TCCTCTCAGTCGTCTCTCTCTCTCGCCATCTCCGCCGTCG--GTCTG----AGGCATCAT 193
Query 134 CTTGGTCGAAGAAGAATCAGCATCAACTTCCATCACGCTC 173
||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTTGGTCGAAGAAGAATCAGCATCAACTTCCATCACGCTC 153
> AT5G66658.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G67245.1); Has 8 Blast
hits to 8 proteins in 2 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:26608316-26608866
FORWARD LENGTH=551
Length=551
Score = 167 bits (90), Expect = 9e-41
Identities = 101/106 (95%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 10 CTTCGTCTTTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCT 69
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3 CTTTGTCTTTGATGATTGCTTTCTTCCTCCAGCATCGTCGTCAATGGAAACGAGAATCCT 62
Query 70 TTGATCTC-C-TCTCAGTCGTCTCTCTCTCGCAATCTCCGCCGTCG 113
|||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 63 TTGATCTCTCCTCTCAGTCGTCTCTCTCTCGCCATCTCCGCCGTCG 108
> AT5G65610.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:26219258-26221028
FORWARD LENGTH=753
Length=753
Score = 150 bits (81), Expect = 9e-36
Identities = 96/102 (94%), Gaps = 5/102 (5%)
Strand=Plus/Minus
Query 1 TCTGAGAAGCTTC---GTCTTTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGA 57
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TCTGAGAAGCTTCTTTGTCTTTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGA 52
Query 58 AACGAGAATCCTTTGATCTC-C-TCTCAGTCGTCTCTCTCTC 97
|||||||||||||||||||| | ||||| |||||||||||||
Sbjct 51 AACGAGAATCCTTTGATCTCTCCTCTCAATCGTCTCTCTCTC 10
> AT5G67245.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G65609.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:26829163-26829662 REVERSE LENGTH=500
Length=500
Score = 139 bits (75), Expect = 2e-32
Identities = 91/98 (93%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 20 GATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCTTTGATCTC-C 78
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 GATGATTGGTTTCTTCCTCCAGCATCGTCGTCAATGGAAACGAGAATCCTTTGATCTCTC 60
Query 79 -TCTCAGTCGTCTCTCTCT--CGCAATCTCCGCCGTCG 113
|||||||||||||||||| ||| |||||||||||||
Sbjct 61 CTCTCAGTCGTCTCTCTCTGTCGCCATCTCCGCCGTCG 98
> AT5G65609.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G67245.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:26219163-26219345 REVERSE LENGTH=183
Length=183
Score = 134 bits (72), Expect = 9e-31
Identities = 91/99 (92%), Gaps = 6/99 (6%)
Strand=Plus/Plus
Query 21 ATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCTTTGATCTC-C- 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCTTTGATCTCTCC 60
Query 79 TCTCAGTCGTCTCTCTCTC-G-CA--ATCTCCGCCGTCG 113
||||| ||||||||||||| | | |||||||||||||
Sbjct 61 TCTCAATCGTCTCTCTCTCTGTCGCCATCTCCGCCGTCG 99
> AT5G65575.1 | Symbols: | other RNA | chr5:26206845-26207913
REVERSE LENGTH=546
Length=546
Score = 124 bits (67), Expect = 6e-28
Identities = 100/114 (88%), Gaps = 10/114 (9%)
Strand=Plus/Plus
Query 64 AATCCTTTGA--TCTCCTCTCAGTCG--TCTCTCTCTCGCAATCTCCGCCGTCGCTGTCG 119
|||||||||| |||||||||||||| |||||||||||| |||| ||| | | ||||
Sbjct 1 AATCCTTTGACCTCTCCTCTCAGTCGTCTCTCTCTCTCGCCATCT---CCG-C-C-GTCG 54
Query 120 GTCTCAGGTTTCATCTTGGTCGAAGAAGAATCAGCATCAACTTCCATCACGCTC 173
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GTCTGAGGCATCATCTTGGTCGAAGAAGAATCAGCATCAACTTCCATCACGCTC 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5