BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935688
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47020.1 | Symbols: | Peptide chain release factor 1 | chr2... 2001 0.0
AT2G47015.1 | Symbols: MIR408 | MIR408; miRNA | chr2:19319780-1... 337 2e-91
> AT2G47020.1 | Symbols: | Peptide chain release factor 1 | chr2:19319685-19322390
REVERSE LENGTH=1758
Length=1758
Score = 2001 bits (1083), Expect = 0.0
Identities = 1222/1287 (95%), Gaps = 17/1287 (1%)
Strand=Plus/Plus
Query 1 GAACACTTGTGCT--AAAAAACATGAGGG-GATTGATTCGGGCAAATTTCTTGAGCAATC 57
||| ||||||||| |||||||||||||| | || |||||| ||||||||||||||||||
Sbjct 90 GAAAACTTGTGCTAAAAAAAACATGAGGGTG-TTAATTCGGCCAAATTTCTTGAGCAATC 148
Query 58 TGATTCGATATTGCTCTAGAGGTACGCATTCATTCGATCGTAGCCTACGATC-G-----T 111
|||||||||||||||||||||||||||||||| |||||||||||| ||||| | |
Sbjct 149 TGATTCGATATTGCTCTAGAGGTACGCATTCACACGATCGTAGCCTGCGATCGGTTCTCT 208
Query 112 CG---AAGATGATTCGTCTGTACACCACCGGAATGGAACCTCAGTTGTCTCCAGATCTTA 168
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 209 CGTCAAATATGATTCGTCTGTACACCACCGGAATGGAACCTCAGTTGTCTCCTGATCTTA 268
Query 169 TTAAGATAATGGATCAGAGGCTATCGGCGATAGAGCACCGAAATGCTCTTCTTCAGAAGC 228
|||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||
Sbjct 269 TTAAGATAATGGATCAGAGGCTCTCGGCGATAGAGCATCGAAATGCTGTCCTTCAGAAGC 328
Query 229 TTATCAACCAGCCTGAGTACTCACCAGAAGAGTTTTCAAGAGCTAATAAGGAACTTCGGA 288
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 329 TTATCAACCAGCCTGAGTACTCACCAGAGGAGTTTTCAAGAGCCAATAAGGAACTTCGGA 388
Query 289 AGCTGAGAGATTCAATGTTTCTCATCAATGATTTGAGGGCCAAACAAAAGGAGATTGATG 348
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 389 AGCTGAGAGATTCAATGTTGCTGATCAATGATTTGAGGGCCAAACAAAAGGAGATTGATG 448
Query 349 GACTGAAATCTCTCGTGTCAGAGAGTTTGGATGATAAGGACATGCTTGATATGGCTGTTA 408
|| |||||||||| ||||| || |||| ||||||||| |||||||||||| |||||| ||
Sbjct 449 GATTGAAATCTCTGGTGTCGGAAAGTTCGGATGATAAAGACATGCTTGATTTGGCTG-TA 507
Query 409 -GTGAATTAGACGAGGCGGTGGAAGAAGAAAAAAGACTTCAAACTTTGCTGCTTAAGGCT 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 508 GGTGAATTAGACGAGGCGGTGGAAGAAGAAAAAAGACTTCAAACTTTGCTGCTTAAGTCT 567
Query 468 TTGCTTCCTAAAGATGAAGCTGATGAGAGGGATTGCATTTTGGAGGTGAGAGCAGGTACT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TTGCTTCCTAAAGATGAAGCTGATGAGAGGGATTGCATTTTGGAGGTGAGAGCAGGTACT 627
Query 528 GGTGGTGAAGAGGCTTCTTTGTTTGCCATGGACATTTTCAGAATGTACGAAAGGTATTCA 587
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 628 GGTGGTGAAGAGGCTTCTTTGTTTGCCATGGACATATTCAGAATGTACGAAAGGTATTCA 687
Query 588 CAGAAGAAAGGTTGGAAATTTGATATTGTAGACATCACCGAGTCAGATATGAAAGGATAT 647
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 688 CAGAAGAAAGGTTGGAAGTTTGATATTGTAGACATCACCGAGTCAGATATGAAAGGGTAT 747
Query 648 AAAGAAGCCAGTGCTGCAATTTGTGGAGCCAGTGTCTACGGAAAACTAAAGTTTGAGAGT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 748 AAAGAAGCCAGTGCTGCAATTTGTGGAGCCAGTGTCTACGGAAAACTAAAGTTCGAGAGT 807
Query 708 GGAATTCACAGGGTTCAGCGTATTCCTATAACCGAGAAATCTGGACGAATTCACACCAGC 767
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 808 GGAATTCACAGGGTTCAGCGTATTCCTATCACAGAGAAATCTGGTCGAATTCACACTAGC 867
Query 768 GCTATATCTGTTGCCATCCTTCCCCAGGCTGATGAGGTAGATGTTCAGCTAAGGAATGAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GCTATATCTGTTGCCATCCTTCCCCAGGCTGATGAGGTAGATGTTCAGCTAAGGAATGAA 927
Query 828 GATTTGAGGATTGATACTTATAGGTCTGGTGGCTCAGGCGGTCAACACGCCAACACAACA 887
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GATTTGAGGATTGACACTTATAGGTCTGGTGGCTCAGGCGGTCAACACGCCAACACAACA 987
Query 888 AACAGCGCAGTCCGAATAATCCATCTTCCAACGGGGATGATGGTCTCAATCCAAGATGAA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AACAGCGCAGTCCGAATAATCCATCTTCCAACGGGGATGATGGTCTCAATCCAAGATGAA 1047
Query 948 AGGTCACAGCATATGAACAGAGCCAAAGCACTTAAAGTTCTCTGTGCAAGGCTTTATGAA 1007
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1048 AGGTCACAACATATGAACAGAGCCAAAGCACTTAAAGTACTATGTGCAAGGCTATATGAA 1107
Query 1008 ATCGAAAGGTTAAGAATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAGATTGGCAGC 1067
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ATCGAAAGGTTGAGAATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAGATTGGCAGC 1167
Query 1068 GGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGAGTGACGGATCAC 1127
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1168 GGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGAGTAACGGATCAC 1227
Query 1128 CGTGTGGGAATCACTCTCCATGCCATTGAAGATATGATGCAAGGAGAGATTCTGGAC-TC 1186
|||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||| |
Sbjct 1228 CGTGTGGGAATCACTCACCATGCCATTGAGGATATGATGCAGGGAGAGAATCTGGACATG 1287
Query 1187 ATTCATTGATGCCCTCCTCTTACGCCAAGAAATGGACGCCATTGCTTCTTTCAGCTCCAC 1246
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1288 -TTCATTGATGCCCTTCTCTTGCGCCAAGAAATGGACGCCATTGCTTCTTTCAGCTCCAC 1346
Query 1247 TTCATGAATGACTGAGGGGTAGACCAA 1273
|||||||||||| ||| ||||||||||
Sbjct 1347 TTCATGAATGACAGAGAGGTAGACCAA 1373
> AT2G47015.1 | Symbols: MIR408 | MIR408; miRNA | chr2:19319780-19321026
FORWARD LENGTH=1247
Length=1247
Score = 337 bits (182), Expect = 2e-91
Identities = 207/219 (95%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 1056 CAGATTGGCAGCGGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CAGATTGGCAGCGGAGACCGATCTGGACGAATCCGTACATACAATTTTCCACAAGGGCGA 449
Query 1116 GTGACGGATCACCGTGTGGGAATCACTCTCCATGCCATTGAAGATATGATGCAAGGAGAG 1175
|| ||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 448 GTAACGGATCACCGTGTGGGAATCACTCACCATGCCATTGAGGATATGATGCAGGGAGAG 389
Query 1176 ATTCTGGAC-TCATTCATTGATGCCCTCCTCTTACGCCAAGAAATGGACGCCATTGCTTC 1234
| ||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 388 AATCTGGACATG-TTCATTGATGCCCTTCTCTTGCGCCAAGAAATGGACGCCATTGCTTC 330
Query 1235 TTTCAGCTCCACTTCATGAATGACTGAGGGGTAGACCAA 1273
|||||||||||||||||||||||| ||| ||||||||||
Sbjct 329 TTTCAGCTCCACTTCATGAATGACAGAGAGGTAGACCAA 291
Score = 287 bits (155), Expect = 2e-76
Identities = 159/161 (99%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 802 AGGTAGATGTTCAGCTAAGGAATGAAGATTTGAGGATTGATACTTATAGGTCTGGTGGCT 861
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 923 AGGTAGATGTTCAGCTAAGGAATGAAGATTTGAGGATTGACACTTATAGGTCTGGTGGCT 864
Query 862 CAGGCGGTCAACACGCCAACACAACAAACAGCGCAGTCCGAATAATCCATCTTCCAACGG 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CAGGCGGTCAACACGCCAACACAACAAACAGCGCAGTCCGAATAATCCATCTTCCAACGG 804
Query 922 GGATGATGGTCTCAATCCAAGATGAAAGGTCACAGCATATG 962
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 803 GGATGATGGTCTCAATCCAAGATGAAAGGTCACAACATATG 763
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 962 GAACAGAGCCAAAGCACTTAAAGTTCTCTGTGCAAGGCTTTATGAAATCGAAAGGTTAAG 1021
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 680 GAACAGAGCCAAAGCACTTAAAGTACTATGTGCAAGGCTATATGAAATCGAAAGGTTGAG 621
Query 1022 AATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAG 1058
|||||||||||||||||||||||||||||||||||||
Sbjct 620 AATACAGAGCAGTCGATCAAAGCTACGGTCAGATCAG 584
Score = 134 bits (72), Expect = 3e-30
Identities = 80/84 (95%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 723 CAGCGTATTCCTATAACCGAGAAATCTGGACGAATTCACACCAGCGCTATATCTGTTGCC 782
|||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1149 CAGCGTATTCCTATCACAGAGAAATCTGGTCGAATTCACACTAGCGCTATATCTGTTGCC 1090
Query 783 ATCCTTCCCCAGGCTGATGAGGTA 806
||||||||||||||||||||||||
Sbjct 1089 ATCCTTCCCCAGGCTGATGAGGTA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5