BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935696
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 756 0.0
AT4G16090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 608 2e-173
> AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G16090.1); Has 161
Blast hits to 161 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:18901392-18902798
REVERSE LENGTH=1314
Length=1314
Score = 756 bits (409), Expect = 0.0
Identities = 604/694 (87%), Gaps = 29/694 (4%)
Strand=Plus/Plus
Query 18 AGCTATGTCGTCTCTGCTTCTAAGTCTCCCTTCCAGGCCCTTTCTCCGCAACCTTGCTCT 77
||||||||| ||||||||||| | ||| |||||| | ||| ||||||||| ||| ||||
Sbjct 38 AGCTATGTCATCTCTGCTTCTCCGCCTCTCTTCCAAGACCTCTCTCCGCAAACTTTCTCT 97
Query 78 GAAATGCCACCAC---ACCCTTCGGATG-T-T-CTCCTCCTCCACCACCACCAACCCGTA 131
|| ||||| |||| |||||||| ||| | | |||||||||||||||||||||||| ||
Sbjct 98 GAGATGCCGCCACAGTACCCTTCGTATGTTCTCCTCCTCCTCCACCACCACCAACCCTTA 157
Query 132 CTTGATGTATCGTCTCACACATTATGGAAGTTCTTTTGATGATATTAATGTAACAAGCAA 191
|||||||| | |||| | |||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 158 CTTGATGTTTAGTCTGATACATTATGGAAGTTGTTTGGATGATATTGATGTAACAAGCAC 217
Query 192 TATCCACTACTTTGATCCGGTCAAGGAAGATGAAGTTATTGTCCGAGACAAGGCCTTTCC 251
||| ||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 218 TATACACTATTTTGACCCGGTCAAGGAAGATGAAATTATTGTCAGAGACAAGGCCTTTCC 277
Query 252 AATGGAGTTGCGTAATACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGT 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CATGGAGTTGCGTAATACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGT 337
Query 312 GGAGA--G-TGATG--A-ACACAAAGCCCTCTATGTTAGCGACTACTGCAATCCTTGTGG 365
||||| | ||||| | ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 338 GGAGACAGGTGATGGTAGACATAAAGCCGTTTATGTTAGCGACTACTGCAATCCTTGTGG 397
Query 366 CTCCAAATCAAATCCCAAAGTCATTCCTTTGCATCCCATG--------GG-TCAACCTAA 416
||||||||||||||||||| |||||||||||||||||||| || | |||||||
Sbjct 398 CTCCAAATCAAATCCCAAAATCATTCCTTTGCATCCCATGTATCCCATGGGTAAACCTAA 457
Query 417 TATCACCCAAA-AGCGCATCATCACTAACGCCGGAATGACTTATTCACCTGATCAAAGTA 475
||| || ||| | ||| ||||||||||||| | |||||||| |||||| ||||||||||
Sbjct 458 TATTACTCAATTA-CGCCTCATCACTAACGCTGCAATGACTTGTTCACCAGATCAAAGTA 516
Query 476 AACATTTTGTAGTGGCGGCCAATTGTTTAGGACTTGAGATCAATTTCTTTAGGCCTTGTG 535
|| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 517 AAGATTTTGTAGTGGCTGCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTG 576
Query 536 GCAAACCAGAGTACT-CT-GG-TTCGGGCGGCTTTAAAACCCAGTCCCAATATTTTGATC 592
||||| | || ||| || || || ||| ||||||||| | ||||| | ||||||||
Sbjct 577 GCAAAACTGACAACTACTCGGGTTTAGGC---TTTAAAACCGAATCCCACTTTTTTGATC 633
Query 593 AATCAAAGGTTATGTATTCAAAGAGAGATGAAAAGTTCTACACTCCTAGTGTTGGAGGCC 652
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 AGTCAAAGGTTATGTATTCAAAGAGAGATAAAAAGTTCTACACTCCTAGTGTTGGAGGCC 693
Query 653 ACTTCTTGGCTTTCTGGGACTCTTGCTTTGAGGA 686
| || |||| ||||||||| |||||||| |||||
Sbjct 694 ATTTGTTGGGTTTCTGGGATTCTTGCTTCGAGGA 727
> AT4G16090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45930.1); Has 76 Blast
hits to 76 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:9103040-9103965
FORWARD LENGTH=845
Length=845
Score = 608 bits (329), Expect = 2e-173
Identities = 580/696 (83%), Gaps = 37/696 (5%)
Strand=Plus/Plus
Query 18 AGCTATGTCGTCTCTGCTTCTAAGTCTCCCTTCC-AGGCCCTTTCTCCGCAACCTTGCTC 76
|||||||||||||||||||||||| ||| ||||| ||| ||| |||||| || ||| |||
Sbjct 35 AGCTATGTCGTCTCTGCTTCTAAGCCTCTCTTCCAAGG-CCTCTCTCCGTAAACTTCCTC 93
Query 77 TGAAATGCCACCACACCCTTCGGATGTTCTCCTCCTCCACCACCACCAACCCGTACTTGA 136
||| ||| |||||| ||||||||||| | |||||| | ||||||||||| ||||||
Sbjct 94 TGAGATG---CCACACTCTTCGGATGTT-T--TCCTCCTCTACCACCAACCCTTACTTGT 147
Query 137 TGTATCGTCTCACACATTATGGAAGTTCTTTTGATGATATTAATGTAACAAGCAATATCC 196
|||||||| ||| | | |||||||||||| | ||||||||| |||||||||| |||||||
Sbjct 148 TGTATCGTGTCATAAACTATGGAAGTTCTATGGATGATATTCATGTAACAAGTAATATCC 207
Query 197 ACTACTTTGATCCGGTCAAGGAAGATGAAGTTATTGTCCGAGACAAGGCCTTTCCAATGG 256
|||| ||||| ||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 208 ACTATTTTGACCCGGTGAAGGAAGATGAAGTTATTGTCCGAGACAAGGTATTACCAATGG 267
Query 257 AGTTGCGTAATA-CGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAA-----TG 310
|||||||||| | | ||||||| ||||||||||| || |||||||||||||| ||
Sbjct 268 AGTTGCGTAA-AGGGTGTCTGGTCGGAATGTCCCATGGTTGGGGAGTTTTCAAGGCCGTG 326
Query 311 TG-GA-GAGTGATGAACACAAAGCCCTCTATGTTAGC-GACTACTGCAATCCTTGTGGCT 367
|| || | | ||||| | |||||| | ||||||| | ||||||| |||||| |||||||
Sbjct 327 TGTGATTA-TAATGAATATAAAGCCATATATGTTA-CTGACTACTACAATCCATGTGGCT 384
Query 368 CCAAATCAAATCCCAAAGTCATTCCTTTGCATCCCATGGGTCAACCTAATATC-ACCCAA 426
||||||| | | |||| |||||||||||||||| | ||| ||||| ||| | | ||||
Sbjct 385 CCAAATC-TGT-CAAAAG-CATTCCTTTGCATCCCCTTGGTAAACCT-ATAGCTATCCAA 440
Query 427 -AAGCGCATC-ATCACTAACGCCGGAATGACTTATTCACCTGATCAAAGTAAACATTTTG 484
|| | | | ||||||||||||| |||||||| ||||||||||||||| ||| ||||||
Sbjct 441 CAA-C-AAGCTATCACTAACGCCGCAATGACTTGTTCACCTGATCAAAGCAAAGATTTTG 498
Query 485 TAGTGGCGGCCAATTGTTTAGGACTTGA-GATCAATTTCTTTAGGCCTTGTGGCAAAC-C 542
||| || | ||| |||||||||| | | |||||||||| ||||||| |||||| || |
Sbjct 499 CAGTTGCTGTCAAGTGTTTAGGACCT-ATGATCAATTTCAATAGGCCTGGTGGCACACAC 557
Query 543 AGAGTACTCTGGTTCGGGCGGCTTTAAAACCCAGTCCCAATATTTTGATCAATCAAAGGT 602
| || |||| ||||||| | ||||||||||| | |||||||||||||||||||||||
Sbjct 558 A-AGGACTCGGGTTCGGTCATCTTTAAAACCCCTTTTCAATATTTTGATCAATCAAAGGT 616
Query 603 TATGTATTCAAAGAGAGATGAAAAGTTCTACACTCCTAGTGTTGGAGGCCACTTCTTGGC 662
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 617 TATGTATTCAAAGAGAGATGAAAAGTTCTACACTCCTAGTTTTGGAGGGCACTTCTTGGT 676
Query 663 TTTCTGGGACTCTTGCTTTG-AGGAG-ATTATGACC 696
||| ||||| |||| ||| | || || || ||||||
Sbjct 677 TTTTTGGGATTCTTTCTTCGGAG-AGGAT-ATGACC 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5