BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935697

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45940.1 | Symbols:  | Protein of unknown function (DUF295) ...   516    1e-145
  AT4G16080.1 | Symbols:  | Protein of unknown function (DUF295) ...   307    9e-83 
  AT2G45930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   211    8e-54 


> AT2G45940.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr2:18903013-18904325 FORWARD LENGTH=1222
Length=1222

 Score =  516 bits (279),  Expect = 1e-145
 Identities = 361/399 (90%), Gaps = 11/399 (3%)
 Strand=Plus/Plus

Query  383   TGTTCAAAGCCTTAGCAGGTATGTTAAAAGCCTTATGCTTAGGTCGGTAAAATTCAATTT  442
             |||||||| |||| |||||| |||| ||||||||  || | |||||||| |||||| |||
Sbjct  694   TGTTCAAACCCTTGGCAGGTCTGTTCAAAGCCTTGCGCATCGGTCGGTAGAATTCAGTTT  753

Query  443   TGGGGGCACAAAGTTGTTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGTTACAC  502
             ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  754   TGGCGGCACAAAGCTGTTCATGGTGTTTAGAGAGGAGGAGGATATGAACATGTGTTACAC  813

Query  503   AGAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGC  562
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814   ACAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGC  873

Query  563   CAGCTCATTCCCAGGCCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTATGGTGA  622
             ||| |||||||| ||||||||||||||||||||||||||| | |||||  | ||||||||
Sbjct  874   CAGTTCATTCCCTGGCCTAAACCCTAATTCCATCTATTTCATAGGTGACCGTTATGGTGA  933

Query  623   AGGCTATGGTGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCAATCCCAAGTCTTT  682
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  934   AGGCTATGGCGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCAATCCCAAGTCTTT  993

Query  683   TTCGGCTTTCTCTGATATAGCTGATTCACCTAATGGC-AAGGTTTACGTGCTTCCTGATT  741
             ||| |||||||||||| |   | |  | | ||||||| |||||| |||| |||||| |||
Sbjct  994   TTCAGCTTTCTCTGAT-T---T-A--C-C-TAATGGCCAAGGTT-ACGTTCTTCCTAATT  1043

Query  742   GGGTTCCTCACTGGATTCCTCCATCTCCTCTCTAGTTGT  780
             || ||||||||||||||||||||| ||||||||||||||
Sbjct  1044  GGCTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTGT  1082


 Score =  368 bits (199),  Expect = 4e-101
 Identities = 246/269 (91%), Gaps = 2/269 (1%)
 Strand=Plus/Plus

Query  113  CACCACCAACCCGTACTTGATGTA-TAGTGTCACCTATTGTGGTGAATACCCAGAGGCCG  171
            |||||||||||| ||||||||||| || ||||||||||| || ||||  |||| ||||||
Sbjct  1    CACCACCAACCCTTACTTGATGTATTA-TGTCACCTATTCTGATGAAGCCCCACAGGCCG  59

Query  172  GTGCAATAACAAAGCTCCGCATGTTTGACCCGGCCAAGGAAGATTATTTCACCGTCGGTG  231
            ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||  ||
Sbjct  60   GTGCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTCCATG  119

Query  232  ATAAGCCACTTTCCAAAGAGTTGGCTAAGTCGAGGCTGGTGGGAAGTTCCCATGGATGGG  291
            ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  120  ATAAGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGG  179

Query  292  GAGTTTTTATTAGCTCCCGGGATTCCATACTAATCAGCGACTACTGCAATCCCTCGAGCT  351
            |||||||| || ||||||   ||||||||||||| |||||||||||||||||||| ||||
Sbjct  180  GAGTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCT  239

Query  352  CCAAATCAAACCCCAAGATGATCCCTCTG  380
            |||||||||||||||||||||||||||||
Sbjct  240  CCAAATCAAACCCCAAGATGATCCCTCTG  268


> AT4G16080.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr4:9101348-9102887 REVERSE LENGTH=1455
Length=1455

 Score =  307 bits (166),  Expect = 9e-83
 Identities = 223/248 (90%), Gaps = 14/248 (6%)
 Strand=Plus/Plus

Query  434   ATTCAATTTTGGGGGCACAAAGTTGTTCATGGTGTTTAGAGAGGAGGAAGATATGAACAT  493
             |||||||| ||| |||||||||  |||||||||||||||||| |||||||| ||||||||
Sbjct  1043  ATTCAATTGTGGCGGCACAAAGCGGTTCATGGTGTTTAGAGAAGAGGAAGACATGAACAT  1102

Query  494   GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTG  553
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1103  GTGTTACACAGAAGACATTGGTGATCTCTGCATATTCCTCGGCAACAACGAGCCTTTTTG  1162

Query  554   TGTCAAGGCCAGCTCATTCCCAGGCCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG  613
             ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct  1163  TGTCAAGGCCAGCTCATTCCCGGGACTAAACCCTAATTCCATCTATTTCCTCGGTGAAGG  1222

Query  614   CTATGGTGAAGGCTATGGTGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCA-ATC  672
             |||         |   |||||||| ||||||||||||||| ||||||||||||||| | |
Sbjct  1223  CTA---------C---GGTGTTTATGATATCGCCACTAGATCCCCACGTTCCTTCACA-C  1269

Query  673   CCAAGTCT  680
             ||||||||
Sbjct  1270  CCAAGTCT  1277


 Score = 86.1 bits (46),  Expect = 5e-16
 Identities = 59/65 (91%), Gaps = 2/65 (3%)
 Strand=Plus/Plus

Query  13   GCAAAGCTATGTCGTCTCTGCTTCTCAGCCTCTCTTCCAGG-CCATCTCTCCGCAAACTT  71
            ||||||||||||||||||||||||||||  ||||||||| | || ||||||| |||||||
Sbjct  141  GCAAAGCTATGTCGTCTCTGCTTCTCAGATTCTCTTCCAAGTCC-TCTCTCCACAAACTT  199

Query  72   GCTCT  76
            |||||
Sbjct  200  GCTCT  204


> AT2G45930.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT4G16090.1); Has 161 
Blast hits to 161 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:18901392-18902798 
REVERSE LENGTH=1314
Length=1314

 Score =  211 bits (114),  Expect = 8e-54
 Identities = 190/224 (85%), Gaps = 16/224 (7%)
 Strand=Plus/Plus

Query  459   TTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGAT  518
             |||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  914   TTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGTTACACTGAGGACATTGGAGAT  973

Query  519   CTCTGCATATTCCTCGGCAATAAC-GAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCAGG  577
             |||||||||||||||||||  ||  ||||| || ||||||||||| ||||||||||| ||
Sbjct  974   CTCTGCATATTCCTCGGCAG-AAGTGAGCCCTTCTGTGTCAAGGCAAGCTCATTCCCTGG  1032

Query  578   CCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTATGGTGTTTA  637
             | |||||||||| |||||||||||  | |   | ||| ||||      || |||||||||
Sbjct  1033  CTTAAACCCTAACTCCATCTATTT--T-GC--A-GGCGATGG------CTTTGGTGTTTA  1080

Query  638   CGATATCGCCACTAGAACCCCACGTTCCTT-CAATCCCAAGTCT  680
             |||||||||||||||||  ||||||||||| |  ||||||||||
Sbjct  1081  CGATATCGCCACTAGAAAACCACGTTCCTTTCG-TCCCAAGTCT  1123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38730527337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5