BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935699
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345... 891 0.0
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 891 0.0
AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037... 649 0.0
AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin fa... 361 5e-99
AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin e... 246 1e-64
AT2G36170.1 | Symbols: | Ubiquitin supergroup;Ribosomal protei... 211 5e-54
AT5G20620.1 | Symbols: UBQ4 | ubiquitin 4 | chr5:6973071-697494... 189 2e-47
> AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345345
FORWARD LENGTH=711
Length=711
Score = 891 bits (482), Expect = 0.0
Identities = 506/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 7 aaaagcaaaaaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTG 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 53 AAAAGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCG 112
Query 67 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTA 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 113 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAA 172
Query 127 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 232
Query 187 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTG 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 233 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAG 292
Query 247 GTGCTaagaagaggaagaagaagacctacaccaagccgaagaagatcaagcacaagcaca 306
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 293 GTGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACA 352
Query 307 agaaggtcaagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGC 366
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 353 AGAAGGTCAAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGC 412
Query 367 GTCTGAGGAAGGAGTGCCCTAACGCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCATT 426
|| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 413 GTTTGAGGAAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATT 472
Query 427 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 532
Query 487 AGGAATGAATTTCATCTCGATCTCTATCTTTTTGAATT 524
|||||||| ||||||||||||||||||| |||||||||
Sbjct 533 AGGAATGATTTTCATCTCGATCTCTATCATTTTGAATT 570
> AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:19344668-19346921 REVERSE LENGTH=1668
Length=1668
Score = 891 bits (482), Expect = 0.0
Identities = 506/518 (98%), Gaps = 0/518 (0%)
Strand=Plus/Minus
Query 7 aaaagcaaaaaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTG 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1649 AAAAGCAAAAAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTCG 1590
Query 67 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTA 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1589 AGGTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAA 1530
Query 127 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 TCCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCT 1470
Query 187 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTG 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1469 TAGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGAG 1410
Query 247 GTGCTaagaagaggaagaagaagacctacaccaagccgaagaagatcaagcacaagcaca 306
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1409 GTGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACA 1350
Query 307 agaaggtcaagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGC 366
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1349 AGAAGGTCAAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGC 1290
Query 367 GTCTGAGGAAGGAGTGCCCTAACGCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCATT 426
|| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1289 GTTTGAGGAAGGAGTGCCCTAACGCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATT 1230
Query 427 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TCGATCGTCACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAGCTC 1170
Query 487 AGGAATGAATTTCATCTCGATCTCTATCTTTTTGAATT 524
|||||||| ||||||||||||||||||| |||||||||
Sbjct 1169 AGGAATGATTTTCATCTCGATCTCTATCATTTTGAATT 1132
> AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037797
FORWARD LENGTH=704
Length=704
Score = 649 bits (351), Expect = 0.0
Identities = 430/469 (92%), Gaps = 2/469 (0%)
Strand=Plus/Plus
Query 16 aaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAGT 75
|||||||||||||||||||||||||||||||||||||||| || || |||||||| || |
Sbjct 40 AAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTTGAAT 99
Query 76 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGG 135
| || ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 100 CATCCGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
Query 136 ACCAGCAGCGATTGATTTTCGCCGG-AAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 194
||||||||||||||||||||||||| ||| ||||| |||||||| |||||| | |||||
Sbjct 160 ACCAGCAGCGATTGATTTTCGCCGGGAAA-CAGCTTGAAGACGGCCGTACCCTCGCCGAC 218
Query 195 TACAACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTGGTGCTaag 254
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct 219 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTAAG 278
Query 255 aagaggaagaagaagacctacaccaagccgaagaagatcaagcacaagcacaagaaggtc 314
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 279 AAGAGGAAGAAGAAGACTTACACCAAGCCGAAGAAGATCAAGCACAAGCATAAGAAGGTT 338
Query 315 aagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGCGTCTGAGG 374
|||||||||||||||||||| ||||| | ||||| ||||| |||||||||||| |||||
Sbjct 339 AAGCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAGG 398
Query 375 AAGGAGTGCCCTAACGCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCATTTCGATCGT 434
||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||
Sbjct 399 AAGGAGTGCCCTAACGCAACCTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
Query 435 CACTACTGTGGTAAGTGTGGTCTCACCTACGTTTACCAGAAAGAAGGAG 483
|| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 459 CATTACTGTGGTAAGTGTGGACTCACCTACGTTTACCAGAAAGAAGGAG 507
> AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin
family protein | chr1:8314924-8315531 FORWARD LENGTH=608
Length=608
Score = 361 bits (195), Expect = 5e-99
Identities = 367/450 (82%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 12 caaa-aa-aaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTT-GAG 68
|||| || || ||||||||||||||||||||||||||||||||||| || || ||| |||
Sbjct 6 CAAACAAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAAC-CTTAGAG 64
Query 69 GTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATC 128
|| || || || ||||| ||||||||||| || || |||||||||||||||||||| |||
Sbjct 65 GTAGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATC 124
Query 129 CCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTT 187
|||||||| ||||| || ||||| ||||||||||| || | ||||| ||| | || ||
Sbjct 125 CCACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACT- 183
Query 188 AGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTG-TCCTTCGTCTCCGTGGTG 246
||| ||||||||||||||||| || || |||||||| ||| | || ||||| | || |
Sbjct 184 AGCTGATTACAACATCCAGAAAGAGTCGACGCTTCAT-TTGGTTCTACGTCTGAGAGGAG 242
Query 247 GTGCTaagaagaggaagaagaagacctacaccaagccgaagaagatcaagcacaagcaca 306
|||| |||||||||||||||||||| ||||| || || |||||||| ||||| | |||||
Sbjct 243 GTGCGAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACA 302
Query 307 agaaggtcaagcTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGC 366
|||| || ||||| || ||||| ||||| |||||||||||||| ||| || ||||||
Sbjct 303 AGAAAGTGAAGCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGA 362
Query 367 G-TCTGAGGAAGGAGTGCCCTAAC-GCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCA 424
| | ||| ||| ||||| ||| | | || |||||| |||| ||||||||||| || ||
Sbjct 363 GGT-TGAAGAAAGAGTGTCCTT-CTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCA 420
Query 425 TTTCGATCGTCACTACTGTGGTAAGTGTGG 454
||||||| | || || ||||| || |||||
Sbjct 421 TTTCGATAGGCATTATTGTGGGAAATGTGG 450
> AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin
extension protein 1 | chr3:19505629-19506932 FORWARD LENGTH=677
Length=677
Score = 246 bits (133), Expect = 1e-64
Identities = 188/215 (87%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 16 aaaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAG- 74
|||||||||||||||||||||||||| | || || ||||| |||||||| |||||||||
Sbjct 35 AAAAGATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGA 94
Query 75 TCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCG 134
| | |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 95 GCAGC-GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCG 153
Query 135 GACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAGCCGAT 194
|| |||||| ||||||| ||||||||||||||||||||||| || ||||| || || ||
Sbjct 154 GATCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGAC 213
Query 195 TACAACATCCAGAAGGAATCAACGCTTCACCTTGT 229
|||||||||||||| ||||| || ||||| |||||
Sbjct 214 TACAACATCCAGAAAGAATCTACACTTCATCTTGT 248
> AT2G36170.1 | Symbols: | Ubiquitin supergroup;Ribosomal protein
L40e | chr2:15172094-15173280 FORWARD LENGTH=680
Length=680
Score = 211 bits (114), Expect = 5e-54
Identities = 166/192 (86%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 17 aaaGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTTGAGGTCGAGTC 76
|||||||||||| ||||||||||| ||||| || ||||| ||||| || |||||||||
Sbjct 56 AAAGATGCAGATTTTCGTGAAAACGCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAG 115
Query 77 CTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGGA 136
| ||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||
Sbjct 116 CAGTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCGGA 175
Query 137 CCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTACCTTAGCCGATTA 196
||||||| | ||||| ||||||||||| ||||| ||||| || |||||||| || || ||
Sbjct 176 CCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACCTTGGCTGACTA 235
Query 197 CAACATCCAGAA 208
||||||||||||
Sbjct 236 CAACATCCAGAA 247
> AT5G20620.1 | Symbols: UBQ4 | ubiquitin 4 | chr5:6973071-6974946
REVERSE LENGTH=1491
Length=1491
Score = 189 bits (102), Expect = 2e-47
Identities = 189/231 (82%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 21 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTT-GAGGTCGAGTCCTC 79
||||||||||| || || || || || || || || || || ||| ||||| || |||
Sbjct 327 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAAACCATTAC-CTTGGAGGTTGAAAGCTC 385
Query 80 TGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCGGACCA 139
|||||| || ||||| |||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 386 TGACACTATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCA 445
Query 140 GCAGCGA-TTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTTAGCCGATTAC 197
||| || || |||||||| || |||||||| ||||| ||| | || ||| || || |||
Sbjct 446 GCAAAGACTT-ATTTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTT-GCTGACTAC 503
Query 198 AACATCCAGAAGGAATCAACGCTTCACCTTGTCCTTCGTCTCCGTGGTGGT 248
|| ||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 504 AATATCCAAAAGGAGTCTACTCTTCACCTTGTCCTTCGTCTCCGTGGTGGT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5