BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935710
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47210.1 | Symbols: | myb-like transcription factor family ... 2333 0.0
> AT2G47210.1 | Symbols: | myb-like transcription factor family
protein | chr2:19378869-19382418 FORWARD LENGTH=1710
Length=1710
Score = 2333 bits (1263), Expect = 0.0
Identities = 1330/1363 (98%), Gaps = 1/1363 (0%)
Strand=Plus/Plus
Query 1 AAATTCGGAACCCTAATT-ACGATGGGTGGTACGGACGCGAAAGACATTCTCGGGTTGCC 59
|||||| ||||||||||| || ||||| |||||||||||||| |||||||||||||||||
Sbjct 149 AAATTCAGAACCCTAATTAACAATGGGCGGTACGGACGCGAAGGACATTCTCGGGTTGCC 208
Query 60 GAAGACTCCACTGTCTTTAACTCTGGAGAAGAAATCTCGACCCCAGAAAGAGTCCCATAG 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 209 GAAGACTCCACTGTCTTTAACTCAGGAGAAGAAATCTCGACCCCAGAAAGAGTCCCATAG 268
Query 120 AAAACCCGATGGCATTTCTCGCGAGGTTTATGCGCTTACCGGCGGCGTTGCACCGCTTAT 179
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 269 AAAACCCGATGGCATTTCTCGCGAGGTTTATGCGCTTACCGGGGGCGTTGCACCTCTTAT 328
Query 180 GCCTTCAATTGATTTAAAGCGACGTCCTCCTCCAGATGAGAAGGTTGCTTGGAAATGGCT 239
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 329 GCCTTCAATTGATTTAAAGCGCCGTCCTCCTGCAGATGAGAAGGTTGCTTGGAAATGGCT 388
Query 240 TTCCTTCACAAATTCTGCTAGGAAAGATGATTTGCAGCTCTACCATTGGGTTAGAGTGGT 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 389 TTCCTTCACAAATTCTGCTAGGAAAGATGATTTGCAGCTTTACCATTGGGTTAGAGTGGT 448
Query 300 TAATGATGTTCCACCAACAGGTGACTATTCCTTTGCCAAATATAACAAGTCTGTTGATAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 449 TAATGATGTTCCACCAACAGGTGACTATTCCTTTGCCAAATATAACAAGTCAGTTGATAT 508
Query 360 TTTGAAATACACAGACGAGGAGTATGAGAATCATTTAACGGATCCTGTGTGGACCAAGGA 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 509 TTTGAAATACACAGACGAGGAGTATGAGAATCATTTAACGGATTCTGTGTGGACCAAGGA 568
Query 420 AGAGACAGATCAGTTGTTTGAATTCTGTCAAAATTTTGATCTCCGCTTTGTTGTAATAGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGAGACAGATCAGTTGTTTGAATTCTGTCAAAATTTTGATCTCCGCTTTGTTGTAATAGC 628
Query 480 TGATCGATTTCCGGTATCACGGACTGTGGAGGAATTGAAGGATCGTTACTACAGTGTAAA 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TGATCGATTTCCAGTATCACGGACTGTGGAGGAATTGAAGGATCGTTACTACAGTGTAAA 688
Query 540 CCGGGCCCTGCTGCGTGCTAGAGCTCAGTCTCCAGCAGATGTTGCAAACCATCCTCTCAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CCGGGCCCTGCTGCGTGCTAGAGCTCAGTCTCCAGCAGATGTTGCAAACCATCCTCTCAT 748
Query 600 GAAGGAACCTTATGATATTACACGCGATAGAGAGCGCAAGCGGGCATTGTCCATGGTCCT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GAAGGAACCATATGATATTACACGCGATAGAGAGCGCAAGCGGGCATTGTCCATGGTCCT 808
Query 660 GTCCCAGAGTAGACATCAGGAGAAGAAAGATGCTGAGATACTTGCTGAGGCTAAAAGAAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 ATCCCAGAGTAGACATCAGGAGAAGAAAGATGCTGAGATACTTGCTGAGGCTAAAAGAAT 868
Query 720 CACAGAGATGCGACTGGCAGCACGTCGTGCAGAAGAACCTGATGTGTCTGCAAATGAGAA 779
||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 869 CACAGAGATGCGATTGGCCGCACGTCGTGCAGAAGAACCTGATGTGTCTGCGAATGAGAA 928
Query 780 CGCCGGTCTCGATAAAGCTGATGGGGTAGTTCCAGGGCGTAGTGTATCTCCAACATCCAA 839
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 929 CGCCGGTCTTGATAAAGCTGATGGGGTTGTTCCAGGGCGTAGTGTATCTCCAACATCCAA 988
Query 840 TTCTCAACTTCCTGCTACTGCCGTGGCTCCATCAACACTAACTATGGCAGATTATGCCTC 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 989 TTCTCAACTTCCTGCTACTGCTGTGGCTCCATCAACACTAACTATGGCAGATTATGCCTC 1048
Query 900 TACCCTTGCTTCTCTCCGCATGCTTCATGTATACTTGAGAACCTATGGACTTGAACAAAT 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 TACCCTTGCTTCTCTGCGCATGCTTCATGTATACTTGAGAACCTATGGACTTGAACAAAT 1108
Query 960 GGTCCAAGCTGCAAGCTCTGCTGTTGGTCTTCGAACGATCAAGCGTGTTGAGCAGACTCT 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1109 GGTCCAAGCTGCAAGCTCTGCTGTTGGTCTTCGAACGATCAAGCGGGTTGAGCAGACTCT 1168
Query 1020 GCAAGATCTCGGGGTTAATTTAAAGCCAAAGGTTCCTACAAAAACTGTATGTGATGAGCA 1079
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1169 GCAAGATCTCGGGGTTAATTTAAAGCCAAAGGTTCCTACCAAAACTGTATGCGATGAGCA 1228
Query 1080 TCTTGAGTTACGAAAAGAAATATTAACACTACTGAATCTTCAGAAGCAGCTGCAATATAA 1139
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 TCTTGAGCTAAGAAAAGAAATATTAACACTACTGAATCTTCAGAAGCAGCTGCAATATAA 1288
Query 1140 GGAATCAGAAGGTTCATCACATCGTGAAGGGTCATATGCTGCAATGCCAGACACTCCAAA 1199
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1289 GGAATCAGAAGGTTCATCACATCGTGAAGGGTCGTATGCCGCAATGCCAGACACTCCAAA 1348
Query 1200 AGATCGTGTTTTCGCATCGGACCCATTCAGTTTTGGAGCTGAAAGACCAATCAAGAAGGA 1259
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 GGATCGTGTTTTCGCACCGGACCCATTCAGTTTTGGAGCTGAAAGACCAATCAAGAAGGA 1408
Query 1260 CCAAAAACGCAAGGGTCCTGGAAGACAAGCAGATACTCCTTCACCAGCTCATAAGCGTCC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ACAAAAACGCAAGGGTCCTGGAAGACAAGCAGATACTCCTTCACCAGCTCATAAGCGTCC 1468
Query 1320 GAGAAAGTTGAAAGCCTCTGATCTCTAAAATCTCTCTACTCGG 1362
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GAGAAAGTTGAAAGCCTCTGATCTCTAAAATCTCTCTACTCGG 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5