BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935712
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase a... 3219 0.0
> AT2G47240.1 | Symbols: CER8, LACS1 | AMP-dependent synthetase
and ligase family protein | chr2:19392558-19397831 FORWARD
LENGTH=2407
Length=2407
Score = 3219 bits (1743), Expect = 0.0
Identities = 1928/2020 (95%), Gaps = 2/2020 (0%)
Strand=Plus/Plus
Query 5 GAGAGAGAGATAGAGAATGAAGTCTTTCGCGGCTAAGGCAGAAGAGGGAGTTAAAGGGAT 64
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 194 GAGAGAGAAATAGAGAATGAAGTCTTTTGCGGCTAAGGTAGAAGAGGGAGTTAAAGGAAT 253
Query 65 AGACGGAAAGCCGTCAGTAGGTCCGGTGTACCGGAATCTCCTGTCGGAAAAAGGTTTTCC 124
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 254 AGACGGAAAGCCGTCGGTAGGTCCGGTGTACCGGAATCTTCTGTCGGAAAAAGGTTTTCC 313
Query 125 TCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATT 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAGTAAATCAGTGGAGAAATT 373
Query 185 CCCTGACAACAATATGCTTGGATGGCGTCGAACTGTTGATGAGAAGGTGGGACCGTATAT 244
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 374 CCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGGTTGGACCATATAT 433
Query 245 GTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATCGGTTCTGCACTACGAGC 304
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 434 GTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATTGGCTCTGCACTACGAGC 493
Query 305 CGTCGGAGCTGAACCTGGGTCTCGAGTGGGGATCTACGGAATTAATTGTCCGCAGTGGAT 364
|| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 494 CGCCGGAGCTGAACCTGGGAGTCGAGTGGGGATCTACGGTGTTAATTGTCCTCAGTGGAT 553
Query 365 CATAGCAATGGAGGCTTGTGCAGCTCACACTCTAATATGTGTACCTCTATATGATACATT 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 554 CATAGCAATGGAGGCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATT 613
Query 425 GGGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCA 673
Query 485 AGACACCAAAATTAAAGGACTCCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC 544
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGACACCAAAATTAAAGGACTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC 733
Query 545 TATAGTTTCCTTCACTAACGTGAGTGCCGAGCTTAGCCACAAGGCTTCAGAGATTGGAGT 604
|||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 734 TATAGTTTCCTTCACTAACGTGAGCGACGAGCTTAGCCACAAGGCTTCAGAAATTGGAGT 793
Query 605 CAAAACATACTCATGGATCGATTTTCTACATATGGGACGTGAGAAACCAGAAGAGACGAA 664
|||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 794 CAAAACATACTCCTGGATCGATTTTCTCCATATGGGACGTGAGAAACCGGAAGACACGAA 853
Query 665 CCCGCCTAAGTCGTTTAACATATGCACCATAATGTACACGAGTGGCACGAGCGGTGATCC 724
|||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 854 CCCGCCTAAGGCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCC 913
Query 725 TAAAGGTGTGGTTTTGACTCACCAAGCGGTGGCGACTTTTGTTGTTGGGATGGATCTCTA 784
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 914 TAAAGGTGTGGTTTTGACTCACCAAGCGGTCGCGACTTTTGTTGTTGGGATGGATCTCTA 973
Query 785 CATGGACCAGTTCGAAGATAAGATGACACATGACGATGTGTATCTCTCCTTCTTGCCGTT 844
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 974 TATGGACCAGTTTGAAGATAAGATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTT 1033
Query 845 GGCTCATATTCTTGACCGTATGAATGAGGAGTACTT-TTTCCGCAAAGGCGCTTCCGTCG 903
|||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||
Sbjct 1034 GGCTCATATTCTTGACCGTATGAACGAGGAATACTTCTTTC-GCAAAGGCGCTTCCGTCG 1092
Query 904 GCTATTACCATGGAGATTTGAATGTGTTACGTGATGACATTCAGGAATTGAAACCGACTT 963
|||||||||||||| ||||||| ||||||||||| || ||||| ||| ||||||||||||
Sbjct 1093 GCTATTACCATGGAAATTTGAACGTGTTACGTGACGATATTCAAGAACTGAAACCGACTT 1152
Query 964 ATCTAGCCGGAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCAAAAGGCTCTTC 1023
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATCTAGCTGGAGTACCAAGAGTGTTTGAGAGAATCCATGAGGGGATTCAAAAGGCTCTTC 1212
Query 1024 AAGAACTTAATCCAAGAAGGAGACTCATCTTCAATGCTCTCTACAAACACAAGCTTGCAT 1083
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1213 AAGAACTTAACCCAAGAAGGAGATTCATCTTCAATGCTCTCTACAAACACAAGCTTGCGT 1272
Query 1084 GGATGAATCGTGGATACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCA 1143
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GGTTGAATCGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCA 1332
Query 1144 GAAAGATTAGGGACAAATTGGGAGGTCGGATCCGGTTGCTAGTATCTGGAGGGGCACCTT 1203
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1333 GAAAGATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCACCTT 1392
Query 1204 TGAGCCCTGAGATTGAAGAGTTCTTGAGAGTTACTTGTTGTTGCTTTGTCGTCCAAGGCT 1263
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1393 TGAGCCCTGAGATTGAAGAGTTTTTGAGAGTTACTTGTTGTTGCTTTGTCGTTCAAGGCT 1452
Query 1264 ACGGCCTAACGGAGACGCTTGGAGGTACGGCTTTGGGTTTCCCGGATGAGATGTGTATGC 1323
|||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1453 ACGGTCTAACGGAGACACTTGGAGGAACGGCTTTGGGTTTCCCGGACGAGATGTGTATGC 1512
Query 1324 TAGGAACAGTCGGTATTCCGGCGGTTTACAACGAGATACGACTTGAGGAGGTGGCTGAAA 1383
|||| |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1513 TAGGGACAGTCGGTATTCCAGCGGTTTACAACGAGATACGGCTTGAAGAGGTGTCTGAAA 1572
Query 1384 TGGGCTATGACCCACTCGGGGAAAATCCAGCAGGGGAGATCTGTATAAGAGGACAATGCA 1443
||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1573 TGGGCTATGACCCGCTCGGAGAAAATCCGGCAGGAGAGATCTGTATAAGAGGACAATGTA 1632
Query 1444 TGTTTTCTGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATAAAAGATGGATGGT 1503
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1633 TGTTTTCAGGGTATTACAAGAACCCTGAACTCACTGAAGAAGTCATGAAAGATGGATGGT 1692
Query 1504 TCCACACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TCCACACAGGAGATATAGGTGAGATTCTTCCAAACGGAGTACTCAAGATCATCGATCGTA 1752
Query 1564 AGAAGAATCTGATCAAACTCTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACA 1623
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 AAAAGAATCTGATCAAACTTTCTCAAGGAGAATATGTTGCTCTCGAGCATTTGGAAAACA 1812
Query 1624 TCTTCGGCCAAAACTCTGTTGTCCAAGATATATGGGTTTACGGAGACAGCTTCAAATCTA 1683
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1813 TCTTCGGGCAAAACTCTGTTGTCCAAGATATATGGGTTTATGGAGACAGCTTCAAATCTA 1872
Query 1684 TGCTTGTCGCCGTGGTTGTTCCCAACCCGGAAACCGTTAACCGGTGGGCTAAAGATCTCG 1743
|||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 1873 TGCTTGTCGCGGTGGTTGTTCCCAACCCAGAAACCGTCAACAGGTGGGCTAAAGATCTCG 1932
Query 1744 GTTTTACTAAACCACTCGAAGAACTCTGTTCTTTCCCGGAGCTTAAAGAACACATCATTT 1803
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1933 GTTTTACTAAACCATTCGAAGAACTCTGTTCTTTCCCGGAACTAAAAGAACACATCATTT 1992
Query 1804 CAGAACTGAAGTCCACGGCAGAGAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGG 1863
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1993 CAGAACTGAAGTCCACGGCAGAAAAGAACAAGCTAAGAAAGTTTGAGTACATCAAAGCGG 2052
Query 1864 TGGCGGTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACACTCAAGA 1923
|| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2053 TGACAGTGGAGACAAAACCTTTCGACGTAGAGAGAGACTTAGTGACTGCGACGCTCAAGA 2112
Query 1924 ATCGGAGGAACAATCTTCTCAAATATTATCAGGTACAAATCGACGAAATGTACCGCAAAT 1983
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2113 ATCGGAGGAACAATCTTCTCAAATATTATCAGGTGCAAATCGACGAAATGTACCGCAAAT 2172
Query 1984 TGGCGTCAAAGAAAATCTGAAAGTGCTGCAATGATGTGTG 2023
|||| |||||||||||||||||||| ||| ||||||||||
Sbjct 2173 TGGCCTCAAAGAAAATCTGAAAGTGTTGCGATGATGTGTG 2212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5