BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935720
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47320.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1197 0.0
> AT2G47320.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:19427372-19428933 FORWARD
LENGTH=844
Length=844
Score = 1197 bits (648), Expect = 0.0
Identities = 698/722 (97%), Gaps = 3/722 (0%)
Strand=Plus/Plus
Query 15 TAACTAATGGCGAAGATCAAACCTCAAGCATTATTGCAGCAAAGCAAGAAGAAGAAAGGA 74
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 52 TAAGTAATGGCGAAGATCAAACCTCAAGCATTGTTGCAGCAAAGCAAGAAGAAGAAAGGA 111
Query 75 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTCTTCTATTGCTTGTC 134
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 112 CCGTCTCGGATAAGCATAACCAACATCGTCATTTACACTTTGGCTGTGCTTTTGCTTGTC 171
Query 135 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTTGTTCTCTTCTCTGCTTACAGACGTTGGACTCACAGATCTGAGATCCCAACGCACAAT 231
Query 195 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GGTAGATCAGTTCTTGAGGATGCAGCCTTCCCTGGAATGAAGAATGTTGATCTTCCGCGG 291
Query 255 TTTGCTGCCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTGTTCAAGGATACTGCT 314
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 292 TTTGCTACCTTAGATACGGGCAAAGGTTCAGTGACCATTGAACTCTTCAAGGATACTGCT 351
Query 315 CCCAATGTGGTTGACCAGTTCATGAAATTGTGTCAAGACGGGTATTTCAAAGGTTTCTTA 374
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 352 CCCAATGTGGTTGACCAGTTCATGAAATTCTGTCAAGATGGGTATTTCAAAGGTTTCTTA 411
Query 375 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCGGGTGACTCTGCAGAGTTCGATGCT 434
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 412 TTCAGTCGAGTTGTAAAGCATTTTGTGATTCAAGCCGGTGACTCTGCGGAGTTCGATGCT 471
Query 435 GTCAAAGATTGGGCACTCGAAAGAAAGAACATTGATACCAGTTTAAAACATGAAGAGTTC 494
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 472 GTCAAAGATTGGGCACTCGACAGAAAGAACATTGATACCAGTTTGAAACATGAAGAATTC 531
Query 495 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCTAGGAGGATTCGAGTTCTTCATTGTATCT 554
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 532 ATGGTGGGAACTCCTAAAGCTAAAAACGAGCAAGGAGGATTCGAGTTCTTCATTGTGTCT 591
Query 555 TCTCAGATCAAAGATCTGAACGAGAAATTGACAGTCTTTGGTCGAGTTTCTAAGGGACAA 614
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 592 GCTCAGATCAAAGATCTGAACGAGAAATTGACTGTCTTTGGTCGAGTTTCTAAAGGACAA 651
Query 615 GACGTCGTTCAGGAGATCGAAGAGGTAGAGACAGATGATCAGTATCAACCAAAGTCGCCA 674
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 652 GACGTTGTTCAGGAGATCGAAGAGGTTGAGACAGATGATCAGTATCAACCAAAGTCGCCA 711
Query 675 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTT---ACTTCTTGTCT 731
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 712 ATAGAGATCATGTCCGTCACTTTGCTTCAAGACATGTAAAAGCTTTTTTACTTCTTGTCT 771
Query 732 CT 733
||
Sbjct 772 CT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5