BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935722
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47340.1 | Symbols: | Plant invertase/pectin methylesterase... 1184 0.0
> AT2G47340.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:19432168-19433104 FORWARD
LENGTH=937
Length=937
Score = 1184 bits (641), Expect = 0.0
Identities = 790/857 (92%), Gaps = 30/857 (4%)
Strand=Plus/Plus
Query 24 ATGGAGCCTTATTACAAATCAATTATCCTCATCGGAGTTACTGTTTGCTGTTATACATTC 83
|||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGCC--A-TACAAAGCAATTATCCTCATCGGAGTTACTGTTTGTTGTTATACATTC 57
Query 84 TCCGGCG--TCC-A-----A-GCCACCGGCCGTTCAGTAG-A-AG---T--C----CCC- 122
||||||| ||| | | ||||||||||||||||||| | || | | |||
Sbjct 58 TCCGGCGTATCCAACGTCCACGCCACCGGCCGTTCAGTAGAAGAGACATCCCAAGTCCCT 117
Query 123 GCTTCCTCACCTGACGCTTCGCTCCTCGAACCACCCGTATCATCAATCTCGGCCGTCCCA 182
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 118 GCTTCCTCACCTGACCCTTCGCTCATCGAACCACCCGTATCATCAATCTCGGTCGTCCCA 177
Query 183 GCCTCCGCACCAGCCCCCACCTCTGAAGACATTAGCACCGAATCTAATTTAACTCCCACG 242
|||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 178 GCCTCCGCACCATCCCCCACCTCTGAAGACATTAACACCGGATCTAATTTAGCTCCCACG 237
Query 243 GCGGCGGTCTCCGCACCCGGAGCATCCCAAGAAGACATCGACATCAACTTCGACTCCGTC 302
||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||
Sbjct 238 GCGGCAGTCTCCGCACCCGGACCATCCCAAGAAGACATAGACATCAACTTCGACTCTGTC 297
Query 303 ACAAACATAGCTGATCTAGCTCCTAAATTTGAACATATAAACAAAATCGATTTCTCGTCA 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 ACAAACATAGCTGATCTAGCTCCTAAATTTGAACATATAAACAAATTCGATTTCTCGTCA 357
Query 363 ATGAAAATCGACACGACGGCGAAAGATCTCTGCAAAAACACAGATTACAACAACGAATGC 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 ATGAAAATCGACACGACGGCGAAAGATCTCTGCAAAAACACAGACTACAACAACGAATGC 417
Query 423 ATCGCCGCGATTCTCCCGGATCTACAGAAACAAGCCggaggag--g-aggag--g-agga 476
||||||||||||||||||||||||||||||||||| | ||||| | ||||| | ||||
Sbjct 418 ATCGCCGCGATTCTCCCGGATCTACAGAAACAAGCAGAAGGAGAAGGAGGAGACGGAGGA 477
Query 477 TTTGAGGCTAAGGATGTGATGCGAATGGAAGCTGAATCTCTGTTTAAAAAAGCGAACGCG 536
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 ATTGCTCCTAAGGATGTGATGCGAATGGAAGCTGAATCTCTGTTAAAAAAAGCGAACGCG 537
Query 537 ACTCTCGATTACGCGAAACGTGTGGTGGAAGATAGCAAAACGCCGATGGCGGTGAAAGAG 596
||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 538 ACTTTGGATTACGCGAAACGTGTGGTGGAAGATAGGAAAACGCCGATGCCGGTGAAAGAG 597
Query 597 GCGATGAGCGTTTGCGTCGAGAATTACGATTCGTTGATGTCAGGTCTTGAAGAAGCGAAG 656
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 598 GCGATGAGTGTTTGCGTCGAGAATTACGATTCGTTGATCTCAGGTCTTGAAGATGCGAAG 657
Query 657 ATGGCGATGGAGGAGGGAGATTACGGGAGATTGGATTCGGTGTTGAGTGCGGCGATCTCC 716
||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 658 ATGGCCATGGAGGAGGGAGATTACGGGAGATTGGATTCGGTATTGAGTGCAGCCATCTCC 717
Query 717 GATGTGTCGACTTGTTCTGATAATTTCGTGGATGTTCCTGGTGTTGATTCGCCGACGGCG 776
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 718 GATGTGTCGACTTGTTCTGATAATTTCGTGGATATTCCTGATGTTGATTCGCCGACGGCG 777
Query 777 TCTCTTGATGAGCTTATGAAGAAGCTCTGTAGCAACGTTTTGGCCATGTCTCAAAAGGTC 836
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 TCTCTTGATGATCTTATGAAGAAGCTTTGTAGCAACGTTTTGGCCATGTCTCAAAAGGTC 837
Query 837 CAGAACCGTTAGATCCA 853
|||||||||||||||||
Sbjct 838 CAGAACCGTTAGATCCA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5