BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935723
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47350.1 | Symbols: | HIT zinc finger ;PAPA-1-like conserve... 2353 0.0
> AT2G47350.1 | Symbols: | HIT zinc finger ;PAPA-1-like conserved
region | chr2:19433791-19437249 FORWARD LENGTH=2175
Length=2175
Score = 2353 bits (1274), Expect = 0.0
Identities = 1435/1512 (95%), Gaps = 14/1512 (1%)
Strand=Plus/Plus
Query 1 ATGCCTATATATGCTCTACAATGGAAGATAATGGTACT-GCTTATTGTGATGGTATGAGG 59
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 491 ATGCCTATATATGCTCTACAATGGAAGATAATGGT-GTAGCTTATTGTGATGGTATGACG 549
Query 60 AATACTGTCAGGAAGAAACGTAGCCTCACTTGTCGTCGTCCTCGCCCCGAGGGATCCAAT 119
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 550 AATACTGTCAGGAAGAAACGTAGCCTCACTTGTCGTCGTCCTCGCCCTGAGGGATCCAGT 609
Query 120 GTTTTAACACCTTCAGATCATTTCAGCAAGATCTCGAGTGATGATTTACCCGCCTTTGAT 179
||||||||| ||||||||| ||||||||||||||||||||||||| |||| || ||||||
Sbjct 610 GTTTTAACATCTTCAGATCGTTTCAGCAAGATCTCGAGTGATGATATACCTGCTTTTGAT 669
Query 180 ACTAACCCTAGAAGGAAAGAGTTTAGTCTTAGCCACTGTATATCAAGGGCTGAATCTATA 239
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 670 ACTAACCCTAGAAGGAAAGAGTTTAGTCTTAGCCATTGTATATCGAGGGCTGAATCTATA 729
Query 240 GCAGAATCTGAAAGAGGAAACAATGATTCTCGCCGGAGAGAGATCATCAATAGAAATAAG 299
|||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||
Sbjct 730 GCAGAATCTGAAAGAGGAAACAATGATTTTAGGCGGAGAGAGATTATCAATAGAAATAAG 789
Query 300 CGTTCGACCGAAGGT-TTACTTGCACCTGCCAGCTCAAAAAACACTAGCCGGAAAGATGA 358
|||||||| |||||| || ||||||||||||||||| ||| || |||||||| ||| |||
Sbjct 790 CGTTCGACTGAAGGTGTT-CTTGCACCTGCCAGCTCGAAATACCCTAGCCGGGAAGTTGA 848
Query 359 AGGTAACGGCGGCATGATCAATGGAAAGGGAACTGATTTGGGTGAGTTAGAGAGAGAAAC 418
|||||| ||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 849 AGGTAA---CGGCATGATCAATGGAAAGGGAACTGATTCGGGTGAATTAGAGGGAGAAAC 905
Query 419 AAAGAGAATGAAGCTTAAGATCGGTGGTGTGAGCCGGCTAGTTCATGCTAATGGTTCATC 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 906 AAAGAGAATGAAGCTTAAGATTGGTGGTGTGAGCCGGCTAGTTCATGCTAATGGTTCATC 965
Query 479 TAGAAAGTCTTCAAAACCGGTGACTGATACTATTCAG-TCCAACCATGATTTACAGGAAA 537
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 966 TAGAAAGTCTTCAAAACCAGTGACTGATACTATTC-GCTCCAACCATGATTTACAGGAAA 1024
Query 538 GTTCAGAAGATTGTAATTCCCCTCTAGATAAGAAGGCTGATCTTGAGGGAGTTACTTGGG 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1025 GTTCAGAAGATTGTAATTCCCCTCTAGATAAGAAGGCTGATCTTGAAGGAGTTACTTGGG 1084
Query 598 ATGCTGAGATAGACGGATCTATGACAGGGAGGAGAAAACAAGGGGAACCATCTGGCTCGG 657
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1085 ATGCTGAGATAGACGGATCTATGACAGGGAGGAGAAAACAAGAGGAACCATCTGGCTTGG 1144
Query 658 TTCGCAAGAGCAAGCGAGCCCCAAAGAAACGAGTTTTTGATAGCGATGACGACAGTGATG 717
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1145 TTCGCAAGAGCAAACGAGCCCCAAAGAAACGAGTTTTCGATAGCGATGACGACAGCGATG 1204
Query 718 ATGAGATCCGGTATTTGGAAAAATTGAAATATAAGAGAGTCTCTGTGTCTAATGAGGATA 777
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1205 ATGAGATCCGGTATTTGGAAAAGTTGAAATATAAGAGAGTCTCTGTGTGTAATGAGGATA 1264
Query 778 CTGAGTCTGGAAGGACGCAATTGAAGCCATCTGGGATAACAAATGGGGAAAATTCCGGCA 837
||||||||||||||| ||| |||| |||||||||||| |||||||| |||||||||||||
Sbjct 1265 CTGAGTCTGGAAGGAAGCAGTTGACGCCATCTGGGATTACAAATGGAGAAAATTCCGGCA 1324
Query 838 AGAAGAAAGCTGTGTCTGAACAGGTGTCCGAAGACATGGATTGTGCGGAGCAAATTGAAG 897
|||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1325 AGAAGAAAGCTGTGTCCGAACAGGCGTCCGAAGACATGGATTGTGCGGAGGAAATTGAAA 1384
Query 898 CGGCGTCTGATGAAAAAGAGATTGGTAATGATAGTAAGAGGGAATCAACTATGACCAGTC 957
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1385 CGGCGTCTGATGAAAAAGAGATTGGTAATGATAATAAGAGGGAATCAACCATGACTAGTC 1444
Query 958 GTCAGCGAGCCCTTGCTTCTGGCAGATCAAGCGCGATTGATTTTTCAGATGGATTACCTC 1017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1445 GTCAGCGAGCCCTTGCTTCTGGCAGATCCAGCGCGATTGATTTTTCAGATGGATTACCTC 1504
Query 1018 CTACATCGAGAAGGAAAAAGGAGACTCTTTCAGAAATGGAGCAGCAATTAAAGAAGGCAG 1077
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1505 CTACATCTAGAAGGAAAAAGGAGACTCTTTCAGAAATGGAGCAGCAATTGAAGAAGGCAG 1564
Query 1078 AAGCTGCTCAAAGGCGAAAAGCTCAGATTGAGAAAGCTGCAAGGGAGTCTGAGGAAGGGG 1137
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1565 AAGCTGCTCAAAGGCGAAAAGTTCAGATTGAGAAAGCTGCAAGGGAGTCTGAGGAAGGGG 1624
Query 1138 CCATTaaaaaaaTTCTAGGTCAAGATTCGAGCAGGAAGAAGCGTGGAGACAAAATaaaaa 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 CCATTAAAAAAATTCTAGGTCAAGATTCGAGCAGGAAGAAGCGTGGAGACAAAATAAAAA 1684
Query 1198 aaCGACTTGATGAGTTGGCTCAGGAGAAGGCTGCACATGAGGAGAGAGCCTCAACTTGCT 1257
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1685 AACGACTTGATGATTTGGCTCAGGAGAAGGCTGCACAAGAGGAGAGAGCCTCAACGTGCT 1744
Query 1258 ACATCAGAACAATAATGGGTCCTAATGGAACCACTGTTTCATTTCCCATTGACAAAGTGC 1317
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 GCATCAGAACAATAATGGGTCCTAATGGAACCACTGTTTCATTTCCCATTGACAAAGTGC 1804
Query 1318 CTAGCCTGTTCGATCCCAAACCATCAGGTTATCCTCCTCCGCGGGAAAATTGCGCAGGTC 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1805 CTAGCCTGTTCGATCCCAAACCATCAGGTTATCCTCCTCCGCGGGAAAATTGTGTGGGTC 1864
Query 1378 CATCGTGCACCAATCCTTACAAGTATCGCGACTCGAAGACTAAAGTTCCTCTATGCAGCC 1437
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1865 CATCGTGCACCAATCCTTACAAGTATCGTGACTCGAAGACTAAAGTTCCTCTATGCAGTC 1924
Query 1438 TCAAATGCTACAAGGCGGTTCAGGAGCAACAGATTGCACCGGCTTA-GA--TATTGAT-- 1492
||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||
Sbjct 1925 TCAAATGCTACAAAGCGGTTCAGGGGCAACAGATTGCACCTCCTTAAGAGATATTGATAT 1984
Query 1493 GAtttttttGAT 1504
||||||||||||
Sbjct 1985 GATTTTTTTGAT 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5