BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935724
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1500 0.0
> AT2G47360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02570.1);
Has 58 Blast hits to 55 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19437800-19438871
FORWARD LENGTH=1072
Length=1072
Score = 1500 bits (812), Expect = 0.0
Identities = 914/962 (95%), Gaps = 12/962 (1%)
Strand=Plus/Plus
Query 1 TTCCTCCCCCTTAGAATAAGATGAGTTTCGCCGGCGGAAAGTGGCGGAAAGAGGCGGAGC 60
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCTCCACCTTAGATTAAGATGAGTTTCGCCGGCGGAAAGTGGCGGAAAGAGGCGGAGC 60
Query 61 AGCTGGTGGTTAAGCCTTTCCGGCTAGTGACAACAActctcctcagcctcctccttcctc 120
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 61 AGCTGGTGGTTAAGCCTTTCCGGCTGGTGACAACAACTCTCCTCAGCCTTCTCCTTCCTC 120
Query 121 tctctttcctcctccttagtcgtctctcttcagcttctttcctcttctccttAACCAAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTTTCCTCCTCCTTAGTCGTCTCTCTTCAGCTTCTTTCCTCTTCTCCTTAACCAAAT 180
Query 181 CTCAGCCACAAACAGAATCATCGTTCTTC-T-T-CTCTCTGTTTCTTCGCGCTAATCCGG 237
||||||| |||||||| ||||| |||||| | | |||||||||||||||||| |||||||
Sbjct 181 CTCAGCCGCAAACAGAGTCATCATTCTTCGTCTTCTCTCTGTTTCTTCGCGCGAATCCGG 240
Query 238 CGGTCGTACACGCCATCGTTTCGTCAATAAGCGTTTACACTCTAGTTCTTGGCCTAACCA 297
|| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGATCGTATACGCTGTCGTTTCGTCAATAAGCGTTTACACTCTAGTTCTTGGCTTAACCA 300
Query 298 CCAAGATCACAGCTACAGATCCAAAACGTTCGATTGCTTTTTATCCACATGTCAGCATCG 357
| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 301 CAAAGATCACAGCTACAGATCCAAAGCATTCGATTGCCTTTTATCCACATGTCAGCATCG 360
Query 358 CGTGGCTTATACTCTTCCTTGTCCAAATATCTGTCGGTTTAGGCCTCGAAACAACGATTT 417
||||||||| |||||||||||| ||||| || |||||| ||||||||||||||||||| |
Sbjct 361 CGTGGCTTACACTCTTCCTTGTTCAAATCTCCGTCGGTATAGGCCTCGAAACAACGATCT 420
Query 418 CCAACGGTTTAATCATCGGAAGCGAACGTAATTTCTTGAGCAGGCTCGTGTTTTTCTTTG 477
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 421 CCAACGGTTTAATCATCGGAAGCGAACGCAATTTCTTGAGCAGGCTTGTGTTTTTCTTTG 480
Query 478 GTCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTGAGACCGGTGGTGGATAACA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTGAGACCGGTGGTGGATAACA 540
Query 538 CCTTGTTAGGAGGAGAAGACGGTCAACGGAGAGAAGAGACGGTGGTGGAGAGGGTGGCTT 597
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 CGTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCTT 600
Query 598 TGGCCGTTAGCTGTGGGACGTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTTGG 657
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGCCGTTAGCTGTGGGACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTTGG 660
Query 658 TTGGTGTGGCTGAGGCTAAAAGAGCATTGTCGTTGTTATTACCAATTGATGGTAATGTCA 717
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 TTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATTACCAATTGATGGTAATGTCA 720
Query 718 ACGTTATTTTTAATGTGGGAACAGTTGATTTTGTGAATTGGTGGTTATATTATATGGTTG 777
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 ACGTTAGTTTTGATGTGGGAACAGTTGATTTTGTGAATTGGTGGCTATATTATATGGTTG 780
Query 778 TGACGATTGGTATGGTTAGGCTCATAAAAGGGTCTTTGTGGTTTGGGATGATTTTGCTTT 837
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGTGGTTTGGGATGATTTTGCTTT 840
Query 838 TCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATTTCTACTGCTTCTTCTACACCTT 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 841 TCGAACAAGGTAGTAGAAGAAGAAATCCACGTGGAATTCCTACTGCTTCTTCTAC---T- 896
Query 898 CTACTCTTCATTTTGATGATCAAGGTGACAATAAAGTGTAAGTAACAGAACAGTTGTCAA 957
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CT--TC---ATTTTGATGATCAAGGTGACAATAAAGTGTAAGTAACAGAACAGTTGTCAA 951
Query 958 AT 959
||
Sbjct 952 AT 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5