BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935730
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47420.1 | Symbols: | Ribosomal RNA adenine dimethylase fam... 1788 0.0
AT1G64560.1 | Symbols: | pseudogene of S-adenosylmethionine-de... 224 1e-57
> AT2G47420.1 | Symbols: | Ribosomal RNA adenine dimethylase family
protein | chr2:19457485-19458881 FORWARD LENGTH=1255
Length=1255
Score = 1788 bits (968), Expect = 0.0
Identities = 1058/1102 (96%), Gaps = 3/1102 (0%)
Strand=Plus/Plus
Query 4 AGAAGCAAAGTGAGCAAGAATGGCGGGAGGCAAGATGAGGAAGGAGAAGCCCAAGGCTTC 63
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 71 AGAAGCAAAGTGAGCAACAATGGCGGGAGGCAAGATCAGGAAGGAGAAGCCCAAGGCTTC 130
Query 64 GAGTCGAGCACCGTCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 123
|| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GAATAGAGCACCATCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCA 190
Query 124 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATTGTTCAGAAGGCTGGGATTAAGAG 183
|||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||
Sbjct 191 ACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATCGTTCAGAAAGCTGGTATCAAGAG 250
Query 184 TACCGATGTGATTCTCGAGATCGGCCCCGGTACCGGAAACTTGACCAAGAAGCTTCTAGA 243
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 251 TACCGATGTGATTCTCGAGATCGGTCCCGGTACTGGAAACTTGACCAAGAAGCTTCTAGA 310
Query 244 AGCTGGCAAAGAAGTTATCGCCGTCGAACTCGATTCTCGTATGGTTCTCGAGCTTCAGCG 303
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 311 AGCTGGCAAAGAAGTTATCGCCGTCGAACTTGACTCTCGTATGGTTCTCGAGCTTCAGCG 370
Query 304 CCGTTTTCAAGGAACTCCCTACTCTAACCGCTTGAAGGTAATTCAAGGTGATGTGCTCAA 363
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 371 CCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGGTAATTCAAGGGGATGTGCTCAA 430
Query 364 GACCGAGCTTCCCCGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 423
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCC 490
Query 424 TCTCACCTTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGCGCTGTCATCATGTACCA 483
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 491 TCTCACATTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGTGCTGTCATCATGTACCA 550
Query 484 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTC 610
Query 544 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTT 670
Query 604 CCGCCCACCCCCAAAGGTCGATTCTTCGGTTGTCCGGATCGAACCTAGGAGGCCTGGCCC 663
|||||| || |||||||| |||||||| |||||| |||||||||| ||||||||||||||
Sbjct 671 CCGCCCTCCTCCAAAGGTGGATTCTTCCGTTGTCAGGATCGAACCAAGGAGGCCTGGCCC 730
Query 664 TCAGGTTAACAAGAAGGAGTGGGATGGCTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 723
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 731 TCAGGTTAACAAGAAGGAGTGGGATGGGTTCTTAAGAGTCTGTTTCATCAGAAAGAACAA 790
Query 724 AACATTGGGATCAATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTCGAGAAGAACTACAA 783
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 791 AACCTTGGGATCCATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTGGAGAAGAACTTCAA 850
Query 784 GACTCTTCAGGCCGTACTAGCTTCCTTGCAGAACAATGGAGATGCTGCTTT-AA-AC-AC 840
|||||||||||||||||||||||| ||||||||||||||||| ||||||| || || ||
Sbjct 851 GACTCTTCAGGCCGTACTAGCTTCGTTGCAGAACAATGGAGAACCTGCTTTGAACACCAC 910
Query 841 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGA 970
Query 901 CGATGATATGGAGATGGATGACGGAGAAGGAGACGGAGGAGAAACATCAGAATTCAAGGA 960
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 971 CGATGATATGGAGATGGATGAGGGAGAAGGAGACGGAGGAGAAACATCAGAGTTCAAGGA 1030
Query 961 GAAAGTTATGACTGTGTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1020
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GAAAGTTATGAATGTCTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATC 1090
Query 1021 ACAACAAGAGTTTTTGTATCTTCTCTCCTTGTTCAACAAGTCGGGTATTCACTTCACATA 1080
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1091 ACAACAAGAGTTTTTGTATCTTCTTTCCTTGTTCAACAAGTCTGGTATTCACTTCACATA 1150
Query 1081 ATTGTTTTGTGGTGGGAAAGTT 1102
|| ||||||||||| |||||||
Sbjct 1151 ATCGTTTTGTGGTGTGAAAGTT 1172
> AT1G64560.1 | Symbols: | pseudogene of S-adenosylmethionine-dependent
methyltransferase/rRNA (adenine-N6,N6-)-dimethyltransferase/rRNA
methyltransferase | chr1:23973729-23974177 FORWARD
LENGTH=449
Length=449
Score = 224 bits (121), Expect = 1e-57
Identities = 281/349 (81%), Gaps = 48/349 (14%)
Strand=Plus/Plus
Query 771 AGAAGAACTACAAGACTCTTCAGGCCGTACTAGCTTCCTTGCAGAACAATGGAGATGCTG 830
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 112 AGAAGAACTACAAGACTCTTCAGGCCGTACTAGCGTCGTTGCAAAACAATGGAGATGCTG 171
Query 831 CT--TT-AAACACCTCC---ATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGA-- 882
|| || ||||| |||| || |||||||||| | ||||| ||||||||||||||||
Sbjct 172 CTGCTTTAAACAACTCCGCCATAGATCTTGGTG-C-AGAGCGTGGGAATGGAAGATGATG 229
Query 883 -CGACAACGAAATGGATGACGATGATATGGAGATGGATGACGGAGAAGGAGACGGAGGAG 941
||||||| ||||||||||||||||||| |||||||||| || | | || |||||
Sbjct 230 ACGACAACAAAATGGATGACGATGATATAGAGATGGATG--GG-G--GT-GA---AGGAG 280
Query 942 AAACATCAGAATTCAAGGAGAAAGTTATGACTGTGTTGAAGGAAGGTGGTTTCGAGGAGA 1001
||| | || | ||| | | ||| | ||||||| |||||||||||||||
Sbjct 281 AAA-----G--TT-AT--AGA---T---G--TGT-T-GAAGGAATGTGGTTTCGAGGAGA 320
Query 1002 AGAGATCTTCAAAGCTATCACAACAAG--A----G--TTTTTGTATCTTCTCTCCTTGTT 1053
||||||||| ||||||||||||||||| | | |||||||||| ||| ||||||||
Sbjct 321 AGAGATCTTTAAAGCTATCACAACAAGTCAACAAGAGTTTTTGTATCGTCTTTCCTTGTT 380
Query 1054 CAACAAGTCGGGTATTCACTTCACATAATTGTTTTGTGGTGGGAAAGTT 1102
||||||||| |||||||||||||| || | |||||||| |||||| |||
Sbjct 381 CAACAAGTCTGGTATTCACTTCACGTAGTAGTTTTGTGATGGGAACGTT 429
Score = 119 bits (64), Expect = 7e-26
Identities = 108/127 (85%), Gaps = 11/127 (9%)
Strand=Plus/Plus
Query 43 GAAGGAGAAGCCCAAGGCTTCGAGTCGAGCACCGTCGAACCATTACCAAGGAGGAATATC 102
||| || || ||||| |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 GAAAGAAAAACCCAAATCTTCGAATCGAGCACCGTCGAACCATTACCGAGGAGGAATATC 60
Query 103 GTTCCACAAATCGAAAGGGCAACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATTGT 162
||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATTCCACAAATC------G----ATATCCTTAAGAA-CCTCTGCTTGTGGATTCGATTGT 109
Query 163 TCAGAAG 169
|||||||
Sbjct 110 TCAGAAG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5