BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935733
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal recogn... 1685 0.0
> AT2G47450.1 | Symbols: CAO, CPSRP43 | chloroplast signal recognition
particle component (CAO) | chr2:19472681-19474314 FORWARD
LENGTH=1634
Length=1634
Score = 1685 bits (912), Expect = 0.0
Identities = 1082/1159 (93%), Gaps = 32/1159 (3%)
Strand=Plus/Plus
Query 1 ATGCAAAAGGTCTTCTTGGCCATGGATACGTGTGCTCTAGTTATCCATCAGTCTCTGTCT 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 101 ATGCAAAAGGTCTTCTTGGCCATGGATACTTGTGCTCTAGTAATCCATCAGTCTCTGTCT 160
Query 61 CGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTC-TGGT-TTCT-C--TCT----TGAA 111
||||||||||||||||||||||||||||||||||| | | |||| | ||| ||||
Sbjct 161 CGCATCAAACTTTCTCCTCCCAAATCTTCTTCTTCTTCTTCTTCTGCTTTCTCCCCTGAA 220
Query 112 T-CTCTACCGATCAGACGGATCCAGCTGTGTTTCCGAGGAGCAAGATGTGCCGCCGTACa 170
| || ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 221 TCCT-TACCGATCAGACGGATCGAGCTGTGTTTCCGAGGAGCTATATGTGCCGCCGTACA 279
Query 171 aaaaaaCTACGAAGAAACGACCTCCTCCGTGGATGAGG-A-A-GACGATGATGA-TGA-- 224
|| |||||||||||||||||||||||||||||| |||| | | || |||||||| | |
Sbjct 280 AAGAAACTACGAAGAAACGACCTCCTCCGTGGAAGAGGCAGAGGAAGATGATGAGTCATC 339
Query 225 GTCATCGTACGGAGAAGTGAAGAGGATCATTGGAAGTCGAACGGCGGCGGAATTAGGAGC 284
|||||||||||||||||||| | |||||||||||| |||||||||| || | ||||||
Sbjct 340 ATCATCGTACGGAGAAGTGAACAAGATCATTGGAAGCCGAACGGCGG-GGGA--AGGAGC 396
Query 285 CATGGAGTATCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 344
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CATGGAGTACCTTATCGAGTGGAAGGACGGCCATTCTCCGTCGTGGGTTCCATCGAGCTA 456
Query 345 CATCGCAGCAGACGTGGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGGAAAGC 404
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 457 CATCGCAGCAGACGTAGTGTCGGAGTACGAGACACCCTGGTGGACGGCAGCTAGAAAAGC 516
Query 405 CGACGAGCAGGCCCTGTCACAGCTTCTGGAGGACCGAGACGTCAACGCCGTAGACGAGAA 464
|||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| ||
Sbjct 517 CGACGAGCAGGCCCTGTCACAGCTCCTGGAGGACCGAGACGTCGATGCCGTGGACGAAAA 576
Query 465 CGGCAGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCAGACAAGTGCGTAAGGCTTCT 524
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 577 CGGCCGGACGGCTCTGCTTTTCGTGGCAGGTCTGGGGTCGGACAAGTGCGTAAGGCTTCT 636
Query 525 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAgggggggCTTGACGGCGCTGCA 584
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 637 GGCGGAGGCTGGAGCCGATCTCGACCACCGAGACATGAGGGGAGGCTTGACGGCGCTGCA 696
Query 585 CATGGCGGCTGGTTACGTGAAGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGCGCTGA 644
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 697 CATGGCGGCTGGTTACGTGAGGCCGGAGGTGGTGGAGGCGCTGGTGGAGCTGGGAGCTGA 756
Query 645 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TATTGAAGTGGAAGACGAGAGAGGGTTAACGGCGTTGGAACTAGCGAGGGAGATTCTGAA 816
Query 705 GACGACGCCAAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 764
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GACGACGCCGAAGGGGAATCCGATGCAGTTCGGGAGGAGAATTGGGTTAGAGAAAGTGAT 876
Query 765 CAATGTCCTCGAAGGACAAGTGTTCGAGTACGCGGAGGTGGAGGAGATCGTAGAGAAACG 824
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 877 CAATGTCCTGGAAGGACAAGTGTTCGAGTACGCCGAGGTGGATGAGATCGTAGAGAAACG 936
Query 825 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGAAGATTGCGAGTG 884
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 937 AGGGAAAGGCAAAGACGTTGAATATCTGGTCAGATGGAAGGACGGTGGAGATTGCGAGTG 996
Query 885 GGTGAAAGGCGTACACGTGGCGGAAGATGTGGCCAAGGACTACGAGGATGGGCTGGAGTA 944
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 997 GGTGAAAGGTGTACACGTGGCGGAAGATGTGGCTAAGGACTACGAGGATGGGCTGGAGTA 1056
Query 945 CGCTGTAGCAGAGAGGGTGATCGGGAAGAGGGTGGCAGACGATGGGAAGACCATCGAGTA 1004
||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1057 CGCTGTAGCGGAGAGTGTGATCGGGAAGAGGGTGGGAGACGATGGGAAGACCATCGAGTA 1116
Query 1005 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAAGACAATGTCGACTC 1064
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1117 TCTTGTCAAATGGACTGATATGTCTGATGCCACTTGGGAGCCTCAGGACAATGTCGACTC 1176
Query 1065 TACACTTATTCTACTCTACCAACAAGAACAAGAACAACAACAACCAATGAATGAATGATT 1124
||| ||| ||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1177 TACTCTTGTTCTACTCT----AC-----C---AACAACAACAACCAATGAATGAATGATT 1224
Query 1125 GATTTTCATGATGATATTC 1143
|||||| ||||| | ||||
Sbjct 1225 GATTTTGATGATTACATTC 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5