BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935735
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47470.1 | Symbols: ATPDIL2-1, UNE5, MEE30, PDI11, ATPDI11 |... 1868 0.0
> AT2G47470.1 | Symbols: ATPDIL2-1, UNE5, MEE30, PDI11, ATPDI11
| thioredoxin family protein | chr2:19481420-19484015 FORWARD
LENGTH=1501
Length=1501
Score = 1868 bits (1011), Expect = 0.0
Identities = 1080/1114 (97%), Gaps = 2/1114 (0%)
Strand=Plus/Plus
Query 11 aaaaaaGATAATGGCGAAATCTCAGATCTGGTTTGGTTTAGCGTTATTCGCGTTGCTTCT 70
|||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 76 AAAAAA-A-AATGGCGAAATCTCAGATCTGGTTTGGTTTTGCGTTACTCGCGTTGCTTCT 133
Query 71 GGTTTCAGCCATAGCTGACGATGTGGTTGTTTTGACTGACGATAGCTTCGAGAAGGAAGT 130
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 134 GGTTTCAGCCGTAGCTGACGATGTGGTTGTTTTGACTGACGATAGCTTCGAAAAGGAAGT 193
Query 131 TGGTAAAGATAAAGGAGCTCTTGTCGAGTTTTACGCTCCCTGGTGTGGCCACTGCAAGAA 190
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 194 TGGTAAAGATAAAGGAGCTCTCGTCGAGTTTTACGCTCCCTGGTGTGGTCACTGCAAGAA 253
Query 191 ACTTGCTCCAGAGTATGAAAAGCTAGGGGCAAGCTTCAAGAAAGCTAAGTCAGTGTTGAT 250
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 254 ACTTGCTCCAGAGTATGAAAAGCTAGGGGCAAGCTTCAAGAAGGCTAAGTCTGTGTTGAT 313
Query 251 TGCAAAGGTTGATTGTGATGAGCAAAAGAGTATCTGTACTAAATATGGTGTTAGTGGATA 310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 314 TGCAAAGGTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATA 373
Query 311 CCCAACCATTCAATGGTTTCCTAAAGGATCTCTTGAACCTCAAAAGTATGAGGGTCCCCG 370
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 CCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAGTATGAGGGTCCACG 433
Query 371 CAATGCTGAAGCATTGGCTGAATACGTGAACAAGGAAGGAGGCACCAATGTAAAATTAGC 430
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 434 CAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGGCACCAACGTAAAATTAGC 493
Query 431 TGCAGTTCCACAAAACGTTGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGA 490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TGCAGTTCCACAAAACGTGGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGA 553
Query 491 TCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGGTGTGGCCACTGCAAATCACT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGGTGTGGCCACTGCAAATCACT 613
Query 551 CGCTCCTACATACGAAAAGGTAGCCACGGTGTTTAAGCAGGAAGAAGGTGTAGTCATCGC 610
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 614 CGCTCCCACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGC 673
Query 611 CAATTTGGATGCTGATGCACACAAAGCCCTCGGAGAGAAATATGGAGTGAGTGGATTCCC 670
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 674 CAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAATATGGAGTGAGTGGATTCCC 733
Query 671 AACATTAAAATTCTTCCCAAAGGACAACAAAGCCGGTCACGATTATGACGGTGGGAGGGA 730
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 734 AACATTGAAATTCTTCCCAAAGGACAACAAAGCTGGTCACGATTATGACGGTGGCAGGGA 793
Query 731 TTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGG 853
Query 791 GCAGCTTACTTCAAAGGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGT 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GCAGCTTACTTCAAAGGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGT 913
Query 851 TGCAGCTAGTGAAGATGAGAAGAAGGCAGTGTTGTCTCGCATAGAAGAGGAAGCAAGTAA 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TGCAGCTAGTGAAGATGAGAAGAAGGCAGTGTTGTCTCGCATAGAAGAGGAAGCAAGTAC 973
Query 911 CCTTAAGGGCTCCACTGCGAGGTATGGGAAGCTCTACTTGAAACTCGCAAAGAGCTACAT 970
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 974 CCTTAAGGGCTCCACCACGAGGTATGGAAAGCTTTACTTGAAACTCGCAAAGAGCTACAT 1033
Query 971 AGAAAAAGGTTCAGACTATGCTAGCAAAGAAACCGAGAGGCTTGGACGTGTCCTTGGGAA 1030
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1034 AGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAA 1093
Query 1031 GTCGATAAGTCCAGTGAAAGCTGATGAACTCACTCTCAAGAGAAATATCCTTACCACGTT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1094 GTCGATAAGTCCAGTGAAAGCTGATGAACTCACTCTCAAGAGAAATATCCTAACCACGTT 1153
Query 1091 CGTTGCTTCTTCTTAAAAGTCATATAGCTTCAAG 1124
|||||||||||||||||||||||||||||| |||
Sbjct 1154 CGTTGCTTCTTCTTAAAAGTCATATAGCTTGAAG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5