BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935736

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47480.1 | Symbols:  | Protein of unknown function (DUF3511)...   414    2e-115


> AT2G47480.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr2:19483919-19484642 REVERSE LENGTH=724
Length=724

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 308/346 (89%), Gaps = 15/346 (4%)
 Strand=Plus/Plus

Query  1    GAGCTCCGGGGTAAAAGGAAATGGATAGTCACGATGGGTGTGGGTACGGGTCGGATCAGA  60
            |||||||||  |||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  84   GAGCTCCGGTTTAAAGGGAAATGGATAGTCACGATGGATGTGGGTACGGGTCGGGTCAGA  143

Query  61   GAACCTACGGGACTCG-TGATCGGAGGACGGAAATCGTGAGTGGTAAGAGTAATCAGATC  119
            |||| ||| ||   || ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  144  GAACTTAC-GG---CGTTGATCGGAGGAAGGAAATCGTGAGTGGTAAGAGAAATCAGATC  199

Query  120  TACGGGACTCAGGATTATCCTCCGTCATTGCCGCCGCCGCCGCCGGGAGAAGTAGCGGCG  179
            |||||||||| ||||||||||||||||   | |||||| ||||||||| |||||||||||
Sbjct  200  TACGGGACTCGGGATTATCCTCCGTCA---CTGCCGCCTCCGCCGGGAAAAGTAGCGGCG  256

Query  180  CGTAA-GAGCAACGCGTCGTCGTCGACGAAGCTGTCTTGG-GGTTTAAGCGATGCGGAGA  237
             | || |||||||||||||||||   |   || |  | || |||||||||||||||||||
Sbjct  257  -GGAAGGAGCAACGCGTCGTCGT---CTTTGC-GAATCGGAGGTTTAAGCGATGCGGAGA  311

Query  238  TGAAGAGGAAGAAGAGAATCGCGAGGTATAAAGCTTATACGGTTGAAGGTAAAGTTAAAT  297
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  312  TGAAGAGGAAGAAGAGAATCGCGAGGTATAAAGCTTATACAGTTGAAGGTAAAGTTAAAT  371

Query  298  CGACTGTGAAGAATGGATTCCGATGGATTAAGAACAAATGCTCTCA  343
            ||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct  372  CGACTTTGAAGAATGGATTCCGATGGATTAAAAACAAATGCTGTCA  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5