BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935749
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47600.1 | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/pro... 2795 0.0
> AT2G47600.1 | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/proton
exchanger | chr2:19524160-19527413 REVERSE LENGTH=2147
Length=2147
Score = 2795 bits (1513), Expect = 0.0
Identities = 1612/1661 (97%), Gaps = 2/1661 (0%)
Strand=Plus/Plus
Query 1 TGGGGTTTAAATAAGCTACAATGGCCTCAATTCTTAATCAAACCCAAGAATTGCAAGAAG 60
|||||||| |||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 150 TGGGGTTTGAATAAGTTACAATGGCCTCAATTCTTAATCAAACCCAGGAGTTGCAAGAAT 209
Query 61 CTTCTAAGGTTCTTGGGCATGTACGATGTGAAAACTTC-TTCATATTCCCCGGAGAAAAT 119
|||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 210 CTTCTAAGGTTCTTGGGCATTTAAGATGTGAAAACTTCTTTC-TATTCCCCGGAGAAAAC 268
Query 120 ACTTTGTCAGATGGTTTGAGGGGTGTGTTATATTTTCTCGGTCTTGCCTACTGCTTTATC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ACTTTGTCAGATGGTTTGAGGGGTGTGTTATATTTTCTCGGTCTTGCCTACTGCTTTATT 328
Query 180 GGGTTATCAGCGATCACTGCACGGTTCTTCAAGTCCATGGAGAATGTCGTGAAACATTCG 239
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 329 GGGTTGTCAGCCATCACTGCACGGTTCTTCAAGTCTATGGAGAATGTCGTGAAACATTCC 388
Query 240 CGTAAAGTGGTTGCAATTGATCCCATTACTAAAGCTGAAATCATCACATACAAGAAAGTT 299
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 389 CGTAAAGTGGTTACAATTGATCCCATTACTAAAGCTGAAGTCATCACATACAAGAAAGTT 448
Query 300 TGGAACTTCACTATTGCAGACATCAGTTTGTTGGCGTTTGGAACTAGCTTCCCTCAGATT 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TGGAACTTTACTATTGCAGACATCAGTTTGTTGGCGTTTGGAACTAGCTTCCCTCAGATT 508
Query 360 TCTTTGGCTACCATCGATGCAATACGGAATATCGGGGAGCGTTATGCTGGAGGTCTTGGT 419
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 509 TCTTTGGCTACCATCGATGCAATACGGAATATGGGGGAGCGGTATGCTGGAGGTCTTGGT 568
Query 420 CCTGGAACACTTGTTGGCTCAGCTGCATTTGATCTTTTCCCCATCCACGCTGTTTGTGTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CCTGGAACACTTGTTGGCTCAGCTGCATTTGATCTTTTCCCCATCCACGCTGTTTGTGTC 628
Query 480 GTTGTGCCAAAAGCTGGAGAACTGAAAAAGATATCCGACTTAGGCGTTTGGCTAGTTGAG 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 629 GTTGTGCCAAAAGCTGGAGAACTGAAAAAGATATCCGACTTAGGTGTTTGGCTAGTTGAG 688
Query 540 CTGGTGTGGTCCTTTTGGGCTTACATCTGGCTATACATAATACTCGAGGTGTGGTCACCA 599
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 689 CTCGTATGGTCTTTTTGGGCTTACATCTGGCTATACATAATCCTCGAGGTGTGGTCACCA 748
Query 600 AATGTAATTACACTTGTGGAGGCATTATTGACAGTATTGCAATACGGATTACTTCTAGTT 659
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 749 AACGTAATTACACTTGTGGAGGCATTATTGACAGTACTGCAATACGGATTGCTTCTAGTT 808
Query 660 CACGCGTACGCCCAAGACAAGCGATGGCCTTACTTGTCTTTACCTATGTCAAGAGGTGAT 719
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 809 CATGCGTACGCCCAAGACAAGCGATGGCCTTACTTGTCTTTACCAATGTCAAGAGGTGAT 868
Query 720 AGGCCAGAGGAGTGGGTTCCAGAGGAGATTGATACATCCAAAGATGACAATGACAATGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGGCCAGAGGAGTGGGTTCCAGAGGAGATTGATACATCCAAAGATGACAATGACAATGAT 928
Query 780 GTTCATGATGTGTATTCGGATGCCGCTCAAGAAGCTGTTGAATCGGGAAGCAGAAACATT 839
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 929 GTTCATGATGTGTATTCGGATGCTGCTCAAGATGCTGTTGAATCGGGAAGCAGAAACATT 988
Query 840 GTTGATATCTTCTCTATTCATTCAGCTAACAATGATACAGGGATCACCTATCATACAGTG 899
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 989 GTTGATATCTTCTCTATTCATTCAGCTAACAATGATACAGGGATCACTTATCATACTGTG 1048
Query 900 GCAGATACTCCACCCGATTCTGCGACTAAGAAGGGTAAGGCGAAGAATTCTTCTGTTTTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1049 GCAGATACTCCACCCGATTCTGCGACTAAGAAGGGTAAGGCGAAGAATTCTACTGTTTTT 1108
Query 960 GACATTTGGAAACATCAATTCGTGGATGCAATAACGTTGGAAACATCAGAATCAAAGAAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GACATTTGGAAACATCAATTCGTGGATGCAATAACGTTGGAAACATCAGAATCAAAGAAA 1168
Query 1020 GTGGATAGCATTTATCTTCGGATCGCGAATTCGTTCTGGCAATTACTCCTCGCCCCTTGG 1079
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 1169 GTGGATAGCATTTATCTTCGAATCGCGAAATCTTTCTGGCATTTACTCCTCGCCCCTTGG 1228
Query 1080 AAACTTCTTTTTGCATTTGTGCCCCCTTGCAACATTGCTCACGGTTGGATTGCTTTCATC 1139
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1229 AAACTGCTTTTTGCATTTGTGCCCCCCTGCAACATTGCTCACGGTTGGATCGCTTTCATC 1288
Query 1140 TGCTCTCTCCTCTTCATCAGTGGAGTAGCCTTTGTTGTCACAAGATTTACCGACCTCATA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1289 TGCTCTCTCCTCTTCATCAGTGGAGTAGCCTTTGTTGTCACAAGATTTACTGACCTTATA 1348
Query 1200 AGCTGTGTCACTGGAATAAACCCATATGTGATAGCATTCACAGCACTCGCAAGTGGAACT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 AGCTGTGTCACTGGAATAAACCCATATGTGATAGCATTCACAGCACTCGCAAGTGGAACT 1408
Query 1260 TCATGGCCAGACTTAGTAGCAAGTAAAATCGCTGCAGAGCGACAACTAACCGCAGATTCA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TCATGGCCAGACTTAGTAGCAAGTAAAATCGCTGCAGAGCGACAACTAACCGCAGATTCA 1468
Query 1320 GCCATTGCAAACATCACCTGCAGTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCG 1379
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 GCTATTGCAAACATCACCTGCAGTAACTCGGTGAACATCTATGTGGGGATTGGAGTTCCG 1528
Query 1380 TGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAAC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 TGGCTGATAAACACAGTCTACAACTACTTTGCATACAGAGAGCCTTTATACATAGAAAAC 1588
Query 1440 GCGAAAGGATTAAGCTTTTCGCTTCTGATATTCTTTGCGACATCAGTGGGATGTATAGTG 1499
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1589 GCTAAAGGATTAAGCTTTTCGCTTCTGATATTCTTTGCGACATCAGTGGGATGTATCGTG 1648
Query 1500 GTGCTTGTGTTGAGAAGGTTGATTATAGGAGCTGAGCTTGGAGGTCCAAGGCTATGGGCT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GTGCTTGTGTTGAGAAGGTTGATTATAGGAGCTGAGCTTGGAGGTCCAAGGCTATGGGCT 1708
Query 1560 TGGCTTACTTCTGCCTATTTCATGATGCTTTGGGTTGTCTTCGTTGTTCTTTCTTCTTTG 1619
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1709 TGGCTTACTTCTGCCTATTTCATGATGCTTTGGGTCGTCTTCGTTGTTCTTTCTTCTTTG 1768
Query 1620 AAAGTTTCAGGCATCATATAGAAGAAGCAACAAAAGGAAAA 1660
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1769 AAAGTTTCAGGCGTCATATAGAAGAAGCAACAAAAGGAAAA 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5