BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935751
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose no... 2398 0.0
> AT2G47620.1 | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose
nonfermenting 3A | chr2:19531947-19534401 FORWARD LENGTH=1776
Length=1776
Score = 2398 bits (1298), Expect = 0.0
Identities = 1483/1575 (94%), Gaps = 2/1575 (0%)
Strand=Plus/Plus
Query 1 ATTGGAGGGAATCGGCAACGGGCATGGAAGCCACTGATCCAAGCGCAGAGCTCGAGCTCT 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 65 ATTGGAGGGAATCGGTAACGGGCATGGAAGCCACTGATCCAAGCGCAGAGATCGAGCTCT 124
Query 61 ACACCATTCCCGCTCAATCCAGTTGGTTCTTATGGGATGATATCCACGAAATTGAAAGAC 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 125 ACACCATTCCTGCTCAATCCAGTTGGTTCTTATGGGATGATATACACGAAATTGAAAGAC 184
Query 121 GCGAATTTGAGGAGTTCTTCACTGAGAGCTCAATCACTAGAACCCCCAAAGTTTACAAGG 180
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GCGAGTTTGCGGAGTTCTTCACTGAGAGCTCAATCACTAGAACCCCCAAAGTTTACAAGG 244
Query 181 AGTACCGAGATTTCATTATCAATAAGTTTAGAGAGGACACTTCTCGGAGGCTCACCTTCA 240
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 245 AGTACCGAGATTTCATTATCAATAAGTTTAGAGAGGACACTTGTCGGAGACTCACCTTCA 304
Query 241 CCAGTGTCCGCAAGTTTCTCGTTGGCGATGTCAATTTGCTTCAGAAAGTGTTCCTCTTCC 300
||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||
Sbjct 305 CCAGTGTCCGCAAGTTTCTTGTTGGCGATGTCAATTTGCTCCAGAAAGTTTTTCTCTTCC 364
Query 301 TCCAAAAATGGGGATTGATCAATTTTAGCTCTTCCCTCAAGAAAAGTGATCATCTCTCGT 360
|| |||||||||||||||||||||||||||||||||| ||||||| ||| ||||| | ||
Sbjct 365 TCGAAAAATGGGGATTGATCAATTTTAGCTCTTCCCTGAAGAAAAATGACCATCTATTGT 424
Query 361 CCGTGGATAGTGCTAAAATCGAACAAGGGACTCCCGCTGGAATTCGAGTTACTGCAACCC 420
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 425 CCGTGGATAATGCTAAAATAGAACAAGGGACTCCTGCTGGAATTCGAGTTACTGCAACCC 484
Query 421 CTAATTCTCTGAGGCCTATTACCGCACCGCCCCTTGTTGAGGAAACAACTGAGACTGGCA 480
|||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 485 CTAATTCTCTTAGGCCTATAACCGCACCGCCCCTTGTTGAGGAAAGAGTTGAGACTGGCA 544
Query 481 TCAAACTACCACCGCTTACCTCTTTTTCAGATGTTTTCAGCGATTTGAAGAAGCCGGATG 540
||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 545 TCAAAGTACCACCGCTTACCTCTTATTCAGATGTTTTCAGTGATTTGAAGAAGCCGGATC 604
Query 541 ATGTATTGGTTTGTG-GACATTGTAGAGAACGTTGTGATTCTCCTTTCTATCGACATAAC 599
||||||||||||||| | |||||| |||||||||| |||||||||||||||| |||||||
Sbjct 605 ATGTATTGGTTTGTGCG-CATTGTGGAGAACGTTGCGATTCTCCTTTCTATCAACATAAC 663
Query 600 AAGAGTATTGTCAACATATGCGAAAACTGTTTCAAGAATGGAAACTATGGGGAGAACAAT 659
||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 664 AAGGGTATAGTCAACATATGCGAAAAGTGTTTCAAGAATGGAAACTATGGGGAGAACAAC 723
Query 660 GCTGCAGATGATTTTAAGTTGATTGGGAATTCAGCTGCAGCTGTGTGGACCGAGGAAGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 724 ACTGCAGATGATTTTAAGTTGATTGGGAATTCAGCTGCAGCTGTGTGGACAGAGGAAGAG 783
Query 720 ACCCTCCTCTTGCTAGAATCTGTGCTGAAACATGGAGATGATTGGGAACTCATTGCACAA 779
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 784 ATCCTCCTCTTGCTAGAATCTGTGCTGAAACATGGAGATGATTGGGAACTCATTTCACAA 843
Query 780 AGTGTTTCTACAAAGAGTAGACTCGATTGCATTTCGAAACTCATTGAGCTCCCGTTTGGA 839
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 844 AGTGTTTCTACCAAGAGTAGACTAGATTGCATTTCTAAACTCATTGAGCTCCCGTTTGGA 903
Query 840 GAGTTTTTGATGGGTCCTGCTTCTGGAAGGCTCATTTCCTCTATCCCCACCGAGGATGAA 899
|||||| |||||||| ||||||||||||| |||| | ||||||||| |||||||||||||
Sbjct 904 GAGTTTCTGATGGGTTCTGCTTCTGGAAGACTCAATCCCTCTATCCTCACCGAGGATGAA 963
Query 900 AACGCGGAACAGGTGAAAACTGATGGTCAAGAACATGAGGAAACCGAGACAAGGGAAGAA 959
||| ||||||||||| |||||||||| || |||||||||||||| |||||||||||||||
Sbjct 964 AACACGGAACAGGTGCAAACTGATGGGCAGGAACATGAGGAAACAGAGACAAGGGAAGAA 1023
Query 960 AAAGAAGATCACGTGGATGAAGACGAGCCTCAAGCAAAAAGGAAACGTGTTGCACTGATA 1019
|||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1024 AAAGAAGATCGCGTGAATGAAGATGAGCCTCCAGCAAAAAGGAAACGTGTTGCACTGATA 1083
Query 1020 TCAGACGGTGATAGTTCACTTATGAAACAGGTCGCTGCCATGGCAAGTAAAGTTGGTCCA 1079
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TCAGAGGGTGATAGTTCACTTATGAAACAGGTCGCTGCCATGGCAAGTAAAGTTGGTCCA 1143
Query 1080 TCTGTCGCAACTGCTGCTGCAAAAGCTGCTCTTGCAGCTCTTTGTGATGAAGCCTCATGT 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1144 TCTGTCGCAACTGCTGCTGCAAAAGCTGCACTTGCAGCTCTTTGTGATGAAGCCTCATGT 1203
Query 1140 CCAAAAGAGATTTTTGACACTGGTGATTACACCAATTTCGCAGTTGACAGAGCTGATGGA 1199
|||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||| |||||
Sbjct 1204 CCAAAAGAGATTTTTGACACTGATGACTACAGCAATTTCACAGTTGATAGAGCCAATGGA 1263
Query 1200 GACAAAGATACAGATTTGGAGGAACAGCAAGAAGACAAAGACGAGCCTCAGGGTCTACCT 1259
|| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1264 GAGAAAGATACAGATATGGAGGAACAGCAAGAAGAGAAAGACGGGCCTCAGGGTCTACCT 1323
Query 1260 GTAGCATTAAGGATAAGAGCGTCAGTGGCAACAGCTCTAGGAGCAGCGGCTGCACAAGCG 1319
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1324 GTAGCGTTAAGGATAAGAGCGTCTGTGGCAACAGCTCTAGGAGCTGCGGCTGCACAAGCG 1383
Query 1320 AAAATACTGGCTGATCAAGAAGAAAGAGAAATGGAACAGTTAGCTGCGACTGTAATAGAC 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1384 AAAATACTGGCTGATCAAGAAGAAAGAGAAATGGAACAGTTAGCTGCGACAGTAATAGAA 1443
Query 1380 CAACAGCTCAAGAAACTGCAGAGCAAGTTGAAGTTTCTGGACCACTTGGAATCGATAATG 1439
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1444 CAACAGCTGAAGAAACTGCAGAGCAAGTTGAAGTTTCTAGACGACTTGGAATCGATAATG 1503
Query 1440 GATGCAGAAGAGGAAGTGATAGAGGGTGTAAAGGAAACAATCATCCAAGAGAGGATTAGC 1499
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1504 GATGAAGAAGAGAAAGTGATAGAGGGTGTAAAGGAAACAATCATCCAAGAGAGGGTTAGC 1563
Query 1500 GTTTTGCAATGCGCATTTCGTAGCGGGATTACCAAACGTTGGGATCATACGTGCGTGAAA 1559
|||||||||||||| ||| | ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1564 GTTTTGCAATGCGCGTTTAGAAGCGGTATTACCAAACGTTGGGATCATACGTACGTGAAA 1623
Query 1560 TGATCTCCTTTTTTC 1574
|||||| ||| ||||
Sbjct 1624 TGATCTTCTTCTTTC 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5