BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935755
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47670.1 | Symbols: | Plant invertase/pectin methylesterase... 977 0.0
> AT2G47670.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:19543991-19544806 REVERSE
LENGTH=816
Length=816
Score = 977 bits (529), Expect = 0.0
Identities = 605/641 (94%), Gaps = 7/641 (1%)
Strand=Plus/Plus
Query 26 Gtcttcttcttcttctatcacgttt--tc-tattctgcttctctctcttcttGTGGCACT 82
||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 58 GTCTTCTTCTTCTCCTATCACGTTTACTCTTCTTCTGCTTCTCTCTCTTCTTGTGGCACT 117
Query 83 AAACCCAAATCCGTCGCTAGCCTCCACCAGTAGCAACGA-CAACACAAACGACATCGTAA 141
|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||| |
Sbjct 118 AAACCCAAATCCGTCGTTAGCCTCCACCGGTAGCAAC-ATCAACACAAACGACATCGTGA 176
Query 142 CGCAGTACAGCACATACGTTAGAAACGCGTGCAACGTAACGCGATACCAA-CGCCTCTGT 200
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 177 CGCAGTACAGCACATACGTTAGAAACGCGTGCAACGTAACGCGATA-CAACCGCCTCTGC 235
Query 201 GTCAGAACGCTATGGCCGTTTGCAATCGTCGCTCGAAACAACACCAGCAAGTGGGCTCGA 260
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTCCGAACGCTATGGCCGTTTGCAATCGTCGCTCGAAACAACACCAGCAAGTGGGCTCGA 295
Query 261 GCTAGCGTCGCGGTGACCATAACCGACACCAAACGGATGCTGAGACTCTTGCTCAAAACG 320
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 296 GCTAGCGTCGCGGTTACCATAACCGACACCAAACGGGTGCTGAGGCTCTTGCTCAAAACG 355
Query 321 CAGCGTTCAGCGGTTGGGGAACGCGAGCGAATCGCCTGGTCGGATTGCCGAGAGCTGTTC 380
||||||||||| ||||| ||| ||||||||||||| | |||||||||||||||||| |||
Sbjct 356 CAGCGTTCAGCAGTTGGCGAAAGCGAGCGAATCGCGTTGTCGGATTGCCGAGAGCTCTTC 415
Query 381 GTTGACTCCCTCGACAATCTGTACAAGTCACTCGCCGTTCTACGGACACTGAACGCGGAT 440
|| ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 416 GTGGACTCTCTCGACAACCTATACAAGTCGCTCGCCGTTCTGCGGACACTGAACGCGGAT 475
Query 441 GAGTTCCAGCGGCAGATAAGCGATCTCGCCACGTGGCTAAGCGCAGCACTCACGGACGAG 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 GAGTTCCAGCGGCAGATAAGCGATCTCGCCACGTGGCTAAGCGCAGCACTCACGGATGAT 535
Query 501 GACACGTGTCTAGATGGATTTGAAGAGACGTCGAGTAGATCACGGACGGTCAGGATGGTT 560
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 536 GACACGTGTCTAGATGGATTTGAAGAGACGTCGAGTAGAACACGGACGGTCAGGATGGTC 595
Query 561 CGGAGGAAGGCTACCAAGTGTATGCGATTATGCAGCAATGCTCTGGCTCTCCTCAACAAG 620
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 596 CGGAGGAAGGCCACCAAGTGTATGCGACTATGCAGCAATGCTCTGGCTCTCCTCAAGAAG 655
Query 621 CTTGCTTTTGATGGCTTGTAATCTACGCTATGATATTTATT 661
|||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTGCTTTTGATGGCTTGTAATCTACGCTATGATATTTATT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5