BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935757

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47690.1 | Symbols:  | NADH-ubiquinone oxidoreductase-relate...   492    9e-139


> AT2G47690.1 | Symbols:  | NADH-ubiquinone oxidoreductase-related 
| chr2:19551263-19552358 FORWARD LENGTH=663
Length=663

 Score =  492 bits (266),  Expect = 9e-139
 Identities = 289/300 (96%), Gaps = 2/300 (1%)
 Strand=Plus/Plus

Query  1    GTTCTTCCGATTTGGGTTGGAGAGGAAATGGCGTCGGGATGGGGAATAACGGGAAACAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   GTTCTTCCGATTTGGGTTGGAGAGGAAATGGCGTCGGGATGGGGAATAACGGGAAACAAA  138

Query  61   GGGAGATGCTACGATTTCTGGATGGATTTCAGTGAATGTATGTCTCACTGCAGAGAGCCC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  GGGAGATGCTACGATTTCTGGATGGATTTCAGTGAATGTATGTCTCACTGCAGAGAGCCC  198

Query  121  AAAGATTGTACTCTCCTTCGTGAAGATTACCTCGAGTGTCTCCACCATTCCAAAGAGTTT  180
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  AAAGATTGTACCCTTCTTCGTGAAGATTACCTCGAGTGTCTCCACCATTCCAAAGAGTTT  258

Query  181  CAAAGAAGGAACAGGATATACAAGGAGGAGCAGCGTAAACTACGAGCAGCTTCAAGGAAA  240
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  259  CAAAGAAGGAACAGGATATACAAGGAGGAGCAGCGTAAACTAAGAGCAGCTTCGAGGAAA  318

Query  241  GGTGAAGAAGGCGTG-GATGGGACTCATACCCATCACTAGTCTCAACAGTCCTCCTCCAA  299
            |||||||||| || | ||||||||||| | |||||||||||||||||| ||||||| |||
Sbjct  319  GGTGAAGAAGCCG-GAGATGGGACTCACAACCATCACTAGTCTCAACAATCCTCCTTCAA  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13823630975


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5