BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935763
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47760.1 | Symbols: ALG3, AtALG3 | asparagine-linked glycosy... 2134 0.0
> AT2G47760.1 | Symbols: ALG3, AtALG3 | asparagine-linked glycosylation
3 | chr2:19565535-19568265 REVERSE LENGTH=1498
Length=1498
Score = 2134 bits (1155), Expect = 0.0
Identities = 1294/1362 (95%), Gaps = 5/1362 (0%)
Strand=Plus/Plus
Query 2 TGCGATTAGCTCTGTTTTCATGGCGGGCGCCTCATCACCGGCGAGTTTGAGAGCTTCTCG 61
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 TGCGATTTGCTCTGTTTTCATGGCGGGCGCCTCATCACCGGCGAGTTTGAGAGCTTCTCG 85
Query 62 TAACCGTCAGCTCGGGAAGGAGACGATTC-TTCCCGATCTATTGAAAAACCCTAAACTTC 120
|| ||||| ||| ||||||||||||| || | |||||||||| ||||| ||| | |||
Sbjct 86 TAGCCGTCGGCTGGGGAAGGAGACGAATCGAT-CCGATCTATTCAAAAAACCTGCAGTTC 144
Query 121 CATTCGCATTCGCTCTAATTCTTGCTGATGCAATCCTCGTCGGACTTATTATCGCCTATG 180
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 145 CATTCGCATTCGCGCTAATTCTTGCTGATGCAATCCTAGTCGCACTTATTATCGCCTATG 204
Query 181 TTCCATACACGAAGATCGATTGGGATGCTTACATGTCACAGGTTAGTGGGTTTCTAGGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 205 TTCCATACACGAAGATCGATTGGGATGCTTACATGTCACAGGTTAGTGGGTTTCTCGGGG 264
Query 241 GAGAGAGAGACTATGGGAACTTGAAAGGCGATACAGGGCCATTGGTTTATCCAGCGGGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 265 GAGAGAGAGACTATGGGAACTTGAAAGGCGATACAGGGCCATTGGTTTATCCAGCAGGTT 324
Query 301 TCCTCTATCTTTACTCTGCAGTGCAGAACTTAACTGGAGGGCAAGTCTACCCTGCTCAGA 360
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 325 TCCTCTATGTTTACTCTGCAGTGCAGAACTTAACTGGAGGGGAAGTCTACCCTGCTCAGA 384
Query 361 TTCTTTTTGGTGTTCTCTACATTGTCAATCTGGGGATCGTCTTGTTCATCTATGTGAAGA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 385 TTCTTTTTGGTGTTCTCTACATTGTCAATCTGGGGATCGTCTTGATCATCTACGTGAAGA 444
Query 421 CTGATGTGGTCCCATGGTGGGCGCTAAGTCTACTTTGTTTATCCAAGAGGATACATTCAA 480
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 445 CTGATGTGGTGCCATGGTGGGCATTAAGTCTACTATGTTTATCCAAGAGGATACATTCAA 504
Query 481 TCTTTGTTCTCCGTCTTTTTAACGATTGTTTTACCATGACTCTCCTACATTCATCAATGG 540
|||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 505 TCTTTGTTCTCCGTCTCTTTAATGATTGTTTTGCCATGACTCTCCTACATGCATCAATGG 564
Query 541 CCCTCTTTCTCTATCATAAATGGCATCTAGGGATGCTTGTTTTCAGTGGAGCTGTTTCTA 600
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CTCTCTTTCTCTATCGTAAATGGCATCTAGGGATGCTTGTTTTCAGTGGAGCTGTTTCTG 624
Query 601 TAAAGATGAATGTACTTTTGTATGCTCCACCTTTGTTACTTCTGCTACTAAAGGCCATGA 660
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 625 TAAAGATGAATGTACTTTTGTATGCTCCAACTTTGTTACTTCTGCTACTTAAGGCCATGA 684
Query 661 ATATAATTGGAGTGGTATCTGCTTTGGCTGGTGCAGCTCTTGTTCAGTTACTCGTGGGAT 720
|||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 685 ATATCATTGGAGTGGTGTCTGCTTTGGCTGGTGCAGCTCTTGTTCAGATACTCGTGGGAC 744
Query 721 TGCCCTTTCTGATAACATATCCGGTTTCATACATAGCAAACGCCTTTGATCTTGGACGTG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TGCCGTTTCTGATAACATATCCGGTTTCATACATAGCAAACGCCTTTGATCTTGGACGTG 804
Query 781 TTTTCATTCACTTCTGGTCTGTTAACTTCAAATTTGTTCCAGAACGAGTTTTTGTATCCA 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 805 TTTTCATTCATTTCTGGTCTGTTAACTTCAAATTTGTTCCAGAACGAGTTTTTGTGTCCA 864
Query 841 AAGAATTTGCAGTATGCTTGCTCATTGCACACCTTTGTCTCCTTGCGGCGTTTGCAAATT 900
|||||||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||
Sbjct 865 AAGAATTTGCAGTATGCTTGCTCATTGCTCACCTTTTTCTCCTTGTGGCGTTCGCAAATT 924
Query 901 ATAAATGGTGCAAGCATGAAGGCGGGATTATAGGCTTCATGCGTTCTAGGCATTTCTTCT 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ATAAGTGGTGCAAGCATGAAGGCGGGATTATAGGCTTCATGCGTTCTAGGCATTTCTTCT 984
Query 961 TGACGCTTCCGTCTTCACTCTCGTTCAGTGATGTCTCAGCCTCACGGATTCTTACGAAAG 1020
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 985 TGACACTTCCGTCTTCACTCTCGTTCAGTGATGTATCAGCCTCACGGATTATTACGAAAG 1044
Query 1021 AACATATCGTCACGGCCATGTTTGTTGGGAATTTCATCGGCATTGTATGTGCTCGCTCTC 1080
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1045 AACATGTCGTCACGGCCATGTTTGTTGGGAATTTCATCGGCATTGTATTTGCTCGCTCTC 1104
Query 1081 TGCACTACCAGTTCTACTCATGGTACTTCTATTCGCTACCTTATCTGCTATGGAGAACAC 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1105 TGCACTACCAGTTCTACTCATGGTACTTCTATTCGCTACCTTATCTACTATGGAGAACAC 1164
Query 1141 CGTTTCCCACTTGGCTGCGCTTGATCGTGTTCCTCGGCATCGAGCTCTGTTGGAACGTGT 1200
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 1165 CGTTTCCCACTTGGCTGCGCTTGATCATGTTCCTCGGCATTGAGCTCTGTTGGAATGTTT 1224
Query 1201 ATCCATCAACACCAG-CCTCCTCGGGTTTGCTATTGTGTCTACACTTTATCATTCTAGTC 1259
||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1225 ATCCATCAACACC-GTCCTCCTCGGGTTTGCTATTGTGTCTACACTTGATCATTCTGGTG 1283
Query 1260 GGTCTCTGGTTAGCTCCTTCAGGCGATCCTTACCAGCTCAAAGAAGACCCTAAATCCCAA 1319
|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1284 GGTCTCTGGTTAGCTCCTTCAGTCGATCCTTATCAGCTCAAAGAACACCCTAAATCCCAA 1343
Query 1320 ACACACAAAAA-GCATAAGTGAACCTTTTGATGCTCTTTTTT 1360
| ||||||||| |||||| |||||||||||||||||||||||
Sbjct 1344 ATACACAAAAAAGCATAACTGAACCTTTTGATGCTCTTTTTT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5