BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935767
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47790.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1827 0.0
> AT2G47790.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:19570964-19573027 REVERSE LENGTH=1398
Length=1398
Score = 1827 bits (989), Expect = 0.0
Identities = 1144/1218 (94%), Gaps = 14/1218 (1%)
Strand=Plus/Plus
Query 6 ATTTCGCTCAAAC--C-AATGGAAGAAGCGTCGTCGGAGATGGAAGTGGAGGTGCAAAAT 62
|||||||| |||| | ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 64 ATTTCGCTGAAACGGCAAATGGAAGAAGTGTCGTCGGAGATGGAAGTGGAGGTTCAAAAT 123
Query 63 CGCCAGCTTTTGGATTCTTCTTCAGCTCAAAAC-----G----TTGGGCTCAAGAACTCT 113
|| ||||||| |||||||||| | ||||||||| | |||||||||||||||||
Sbjct 124 CGTCAGCTTTCGGATTCTTCTCCGGCTCAAAACGTGAAGAAATTTGGGCTCAAGAACTCT 183
Query 114 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACA 243
Query 174 GCAATTGCGGTTTCGTTATCCACCAACACCGTCAAGCTTTACTCTCCGGTGACTGGTCAA 233
||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 244 GCAATCGCGGTTTCCTTATCAACCAACACCGTCAAGCTTTACTCGCCGGTGACTGGTCAG 303
Query 234 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGAC 363
Query 294 TCAGCGGCCTCTCCTCACGTTCTGCACTCTTGTTCCTCCGATGGCACCATTAGATCTTGG 353
|| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 364 TCGGCGGCGTCTCCTCACGTTTTGCACTCTTGTTCCTCCGATGGTACCATTAGATCTTGG 423
Query 354 GACACGCGAAGTTTCCAACAGGTTTCATGTATTGTTGCTGGGGATGATCAGGAGGTTTTC 413
||||| |||||||||||||||||||| |||||| | ||||| ||||||||||| |||||
Sbjct 424 GACACTCGAAGTTTCCAACAGGTTTCGCGTATTGATACTGGGAATGATCAGGAGATTTTC 483
Query 414 AGCTTCTCCTATGGAGGTGCTGCAGATCATCTTTTGGCTGGTGGATGCAAAGAGCAGGTT 473
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 484 AGCTTCTCCTATGGAGGTGCTGCAGATAATCTTCTGGCTGGTGGATGCAAAGAGCAGGTT 543
Query 474 CTTCTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 533
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CTTTTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGAC 603
Query 534 GACGTCACTCAGGTACACTTTGTTCCTAACAACCCCAACAAGCTTCTTTCAGCTTCCGTG 593
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 604 GACGTCACTCAGGTACACTTTGTTCCTAACAAGCCCAACAAGCTTCTTTCCGCTTCCGTG 663
Query 594 GATGGATTGATATGTCTATTTAACACTGAAGGTGATATCAATGACGATGACCATCTGGAA 653
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 664 GATGGATTGATATGTCTTTTTAACACTGAAGGTGATATCAATGACGATGATCATCTGGAA 723
Query 654 TCTGTGATCAATGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATTGCTATAAA 713
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 724 TCTGTCATCAACGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATGGCTATAAA 783
Query 714 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGCATTTGGAACTGGCAAGATGGAAGC 773
||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||
Sbjct 784 AAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGTATTTGGAATTGGGAAGACGGAAGC 843
Query 774 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCTGATAATTGGGCTCAGGATAAT 833
|||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||
Sbjct 844 TGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCAGATAGTTGGACTCAAGATAAT 903
Query 834 GTTGATTATTTTGTTGATTGCCATTGTCCAGGAGGGGAAGATTTATGGGTGATTGGTGGA 893
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 904 GTTGATTATTTTGTTGATTGTCATTGTCCAGGAGGTGAAGATTTATGGGTGATCGGTGGA 963
Query 894 ACCTGCGCAGGAACCATTGGTTATTTTCCGGTGAACTATAAACAGCCTGGATCAATCGGT 953
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 964 ACGTGCGCAGGAACCGTTGGTTATTTTCCGGTGAACTACAAACAGCCTGGATCAATCGGT 1023
Query 954 ACCGCTGAAGCTATCCTTGGTGGAGGTCACGTAGATGTAGTAAGGAGTGTTGTGCAGATG 1013
|||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 1024 ACCGCTGAAGCTATTCTTGGTGGAGGTCACATAGATGTAGTAAGGAGCGTTCTGCAGATG 1083
Query 1014 CCATGTGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGCGGTGAAGATGGGCGG 1073
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1084 CCAGGCGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGGGGTGAAGATGGGCGA 1143
Query 1074 CTATGTTGCTGGAAGTCCGATGAGAATTCTACAGAGAATAACCGGTCTTGGACTTCAAGT 1133
||||||||||||||||| |||||| || |||| |||| ||||||||||||||||||||||
Sbjct 1144 CTATGTTGCTGGAAGTCGGATGAGGATGCTACCGAGATTAACCGGTCTTGGACTTCAAGT 1203
Query 1134 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAGTAA 1263
Query 1194 AC-GAATACTACTTTTTG 1210
|| || ||||||||||||
Sbjct 1264 ACAGA-TACTACTTTTTG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5