BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935778

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47895.1 | Symbols:  | other RNA | chr2:19610473-19610962 FO...   307    3e-83


> AT2G47895.1 | Symbols:  | other RNA | chr2:19610473-19610962 
FORWARD LENGTH=417
Length=417

 Score =  307 bits (166),  Expect = 3e-83
 Identities = 195/209 (93%), Gaps = 2/209 (1%)
 Strand=Plus/Plus

Query  86   ACCTGGAGGACCAGGGTTCTTGCCACCGGGAGGACCCGGCTTCTTCCCACCCATTGGTGG  145
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  77   ACCCGGAGGACCAGGGTTCTTGCCACCGGGAGGACCAGGCTTCTTCCCACCCATTGGTGG  136

Query  146  TTTCTTTTCTGGGTTCTCAGACATGATATGTTCCTGTCTATCTTGCCTGTGCTGCTGCTG  205
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  137  TTTCTTTTCTGGGTTCTCCGACATGATATGTTCCTGTCTATCTTGTCTGTGCTGCTGCTG  196

Query  206  GCTGCTACGAGATTGCTTTGGCGGCTCACCACCACAAGGACCGCCACTTCTTCCTCCCTA  265
            ||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||
Sbjct  197  GCTGCTACGAGATTGCTTTGGCGGCCCACCGCCACAAGGACCGCCACTTCTGCCACCCTA  256

Query  266  TAATTGATCACATCT-AGCTCTTTTGGTC  293
            | ||||| ||||||| | |||  ||||||
Sbjct  257  TTATTGACCACATCTGA-CTCCATTGGTC  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5