BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935782
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47920.1 | Symbols: | Kinase interacting (KIP1-like) family... 917 0.0
> AT2G47920.1 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr2:19615777-19616904 FORWARD LENGTH=932
Length=932
Score = 917 bits (496), Expect = 0.0
Identities = 651/722 (90%), Gaps = 26/722 (4%)
Strand=Plus/Plus
Query 14 aaaaaaaaaTGGTGAGAGAAGAGGAGAAATCGAGATGGTGGTGGTTCGAGAGTCACAAGA 73
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 104 AAAAAGAAATGGTTAGAGAAGAGGAGAAATCGAGATGGTGGTGGTTCGAGAGCCACAAGA 163
Query 74 GCTCCAAACACTCTCAATGGCTTCAATCAACACTCGCTGAGCTTGATGCCAAGACCAAGG 133
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 164 GCTCCAAACATTCTCAATGGCTTCAATCAACACTCGCTGAGATTGATGCAAAGACAAAGG 223
Query 134 CAATGTTGAAGCTGATT-GAAGGCAACGCAGACTCTTTTGCGCAGCGTGCTGAGACTTAC 192
||||||||||| || || || || |||||||||||||| || ||||||||||||||||||
Sbjct 224 CAATGTTGAAGTTG-TTAGACGGAAACGCAGACTCTTTCGCTCAGCGTGCTGAGACTTAC 282
Query 193 TACAAGAAACGTCCTGAGCTTATCTGCTTTGTCGAAGACTTTTATCGGGCTCACCGTTCC 252
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 283 TACAAGAAACGTCCTGAGCTTATCAGCTTTGTCGAAGACTTTTATCGAGCTCACCGTTCC 342
Query 253 TTAGCCGAGAAGTTTGACCACCTCAAATCTTCCGACTAC---GGATCCCGCTCCTCTAAG 309
||||||| ||| || ||||||||||| ||||||||| || ||||| |||||| |||||
Sbjct 343 TTAGCCGTGAACTTCGACCACCTCAAGTCTTCCGACCACTATGGATCTCGCTCCGCTAAG 402
Query 310 TTTCCCCAACAATCCATGGACTCCGTTTCTGACAGCAATTCTCACTTTCAAGATGCCCAT 369
||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||
Sbjct 403 GTTCCCCAACAATCCATGGAGTCCGTTTGTGACAGCAATTCTCACTTTGAAGATGCCGAT 462
Query 370 TCTGAGATCGCAGACCC--TG-AAGATGACCAACTTGACTCTCC-CTTTGCT-AGTCACA 424
|||||||| | |||||| | ||||||| | | | |||| | ||| | | ||
Sbjct 463 TCTGAGATTGAAGACCCCCTTCAAGATGA-----T-G-C-CTCCGCA--GCTGATTG-CA 511
Query 425 AAGAAGATGAGACTTGG-AATTTGGAACAAGAAAGGTTGAAGCTGATCGAAGAGAGTGAT 483
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct 512 AAGAAGATGAGACTTGGCAATT-GGAACAAGAAAGGTTGAAGCTGATCGAAGAGACTGAT 570
Query 484 GCTCTGAGGAAACAGCTGCT-AGACAAGGACGAGGAGAAGAGAGAGGTCATCAGACAGCT 542
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 571 GCTCTGAGGAAACAGCT-CTTAGACAAGGACGAAGAGAAGAGAGAGGTCATCAGACAGCT 629
Query 543 TTCTCTAACCCTTGAGACCCTCAAAGACGAGAACTTTAGCCTCAAGAGACGCCTTGCCCA 602
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 630 TTCTCTAACCCTTGAGACCCTCAAAGACGAGAACTTGAGCCTCAAGAGACGCCTTGCCCA 689
Query 603 CCATTCTCTCAAGCGACGCACCTTTTTGGAGTTCAAGCCACTCGACAAGTTCTTCGGGAA 662
|||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct 690 CCATTCTCTCAAGCAACGCACCGTTTTGGAGTTCAAGCCACTAAACAAGTTCTTTGGGAA 749
Query 663 GCTGTTCTACATTGTGTGTGATGGCAACAAGGTCGTTTAGCT-GGCTCATCTACCTCATG 721
|||||| |||||| |||| ||||||||||||||| ||||| | |||||||||||||||||
Sbjct 750 GCTGTTTTACATTATGTGCGATGGCAACAAGGTCCTTTAGGTTGGCTCATCTACCTCATG 809
Query 722 AG 723
||
Sbjct 810 AG 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5