BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935783
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47930.1 | Symbols: AGP26, ATAGP26 | arabinogalactan protein... 662 0.0
> AT2G47930.1 | Symbols: AGP26, ATAGP26 | arabinogalactan protein
26 | chr2:19616975-19617681 REVERSE LENGTH=707
Length=707
Score = 662 bits (358), Expect = 0.0
Identities = 431/464 (93%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 2 GAGAGACACAT-ACAGTAACCATGAGGGTCTCTCTGTTCACCGCCTTCACCGTTCTCTCA 60
|||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 33 GAGAGACA-TTCACAGTAACCATGTCCGTCTCTCTGTTCACTGCCTTCACCGTTCTCTCA 91
Query 61 CTCTGTTTACACACTTCAACATCCGAGTTCCTAGAGTTTCAGCTGTCCACCATATCAGCT 120
||||||||||||||||| | | | | | || |||||||||||||||||||||||||||
Sbjct 92 CTCTGTTTACACACTTC-A-A--C-A--T-CT-GAGTTTCAGCTGTCCACCATATCAGCT 142
Query 121 GCACCTTCGTTTTTGCCTGAAGCTCCATCGAGTTTCTCAGCTTCT-CCTCCGGCCATGTC 179
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 143 GCACCTTCGTTCTTGCCTGAAGCTCCATCGAGTTTCTCAGCTTCTACC-CCGGCCATGTC 201
Query 180 TCCAGATACCTCTCCCCTGTTCCCAACTCCAGGTTCAAGCGAAATGTCTCCTTCCCCGTC 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 202 TCCAGATACCTCTCCCCTGTTCCCTACTCCAGGTTCAAGCGAAATGTCTCCTTCCCCGTC 261
Query 240 AGAATCTTCTATCATGCCGACAATCCCCTCAAGCCTAAGTCCACCAAACCCAGATGCTGT 299
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 262 GGAATCGTCTATCATGCCGACAATCCCCTCAAGCCTTAGTCCACCAAACCCAGATGCTGT 321
Query 300 CTCTCATGATCCTCTGCTCGAATTTTCTCCAGTTGGGTCACCTCTTCCTGCTTCTTCCTC 359
| ||| |||||||||||||||| ||||||||||||| || |||||||| |||||||||||
Sbjct 322 CACTCCTGATCCTCTGCTCGAAGTTTCTCCAGTTGGATCTCCTCTTCCAGCTTCTTCCTC 381
Query 360 TGTTTGTTTGGTCTCATCACAACTCTCATCTCTGCTTCTTGTCCTCCTCATGTTGCTACT 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 382 TGTTTGTTTGGTCTCATCACAACTCTCATCTCTGCTTCTTGTCCTACTCATGTTGCTACT 441
Query 420 AGATTTCTGCAGTATCTTCTAGTAAGCATATAGAAACAGCGAGT 463
|| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 442 AGCTTTCTGCAGTTTCTTCTAGTAATCATATAGAAACAGCGAGT 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5