BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935789
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47990.1 | Symbols: SWA1, EDA13, EDA19 | transducin family p... 2483 0.0
> AT2G47990.1 | Symbols: SWA1, EDA13, EDA19 | transducin family
protein / WD-40 repeat family protein | chr2:19636867-19638678
REVERSE LENGTH=1812
Length=1812
Score = 2483 bits (1344), Expect = 0.0
Identities = 1539/1633 (94%), Gaps = 14/1633 (1%)
Strand=Plus/Plus
Query 9 TACTGTTGAAGAATGGAGGAAGAGCTTCGTGTTCGGCTGAATGACCATCAAGTGTCAAAG 68
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TACTCTAGAATAATGGAGGAAGAGCTTCGTGTTCGGCTGAATGACCATCAAGTGTCAAAG 124
Query 69 GTTTTCCCTGTGAAACCAAAATCAACGGCGAAACCTGTTTCCAAATCGGAGACTCCGGAA 128
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 125 GTTTTCCCTGTGAAGCCCAAATCAACGGCGAAACCTGTTTCCGAATCGGAGACTCCGGAA 184
Query 129 TCCAGATACTGGTCCTCTTTCAAAAATCATTCCATACC-AACTCTCGTCTCCTCCGT-GT 186
|| || ||||||||||| |||||||||||||||| ||| || ||||||||||||||| |
Sbjct 185 TCGAGGTACTGGTCCTCCTTCAAAAATCATTCCACACCTAA-TCTCGTCTCCTCCGTAG- 242
Query 187 CCGCCTTGGCTTTCTCTCCGGTCCACCCCCACTCCTTGGCCGTCGCTCACTCCGCCACCG 246
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 243 CCGCTTTGGCTTTCTCTCCGGTCCACCCTCACTCCTTGGCCGTCGCTCACTCCGCCACCG 302
Query 247 TCTCCCTCTTTTCCTCGCACTCGCTTTCCTCCTCCCGCCGTTTCTCCTTCCGTGATGTTG 306
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 303 TCTCCCTCTTTTCCTCGCAGTCGCTTTCCTCCTCCCGCCGTTTCTCCTTCCGCGATGTTG 362
Query 307 TCTCCTCCGTCTGCTTCCGTTCCGACGGAGCTCTTTTCGCCGCATGCGATCTCTCCGGTG 366
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 363 TCTCCTCCGTCTGTTTCCGTTCCGACGGAGCTCTTTTCGCGGCATGCGATCTCTCCGGTG 422
Query 367 TCGTCCAGGTCTTCGACATCAAGGAGCGAATGGCTCTCCGTACCCTCCGCTCCCACAGCG 426
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 423 TGGTCCAGGTCTTCGACATCAAGGAACGAATGGCTCTCCGTACTCTCCGCTCCCACAGCG 482
Query 427 CACCCGCTCGATTCGTCAAGTATCC-GTTTCAGGACAAGCTCCACTTGGTATCCGCCGGC 485
| ||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||
Sbjct 483 CCCCCGCTCGATTCGTCAAGTATCCAG-TTCAGGACAAGCTCCACTTGGTCTCCGGAGGC 541
Query 486 GACGACGGAGTGGTCAAGTACTGGGATGTCGCCGGAGCAACCGTCATCTCAGATCTGTTA 545
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 542 GACGATGGAGTCGTCAAGTACTGGGATGTCGCCGGAGCAACAGTCATCTCAGATCTGCTA 601
Query 546 GGCCACAAGGACTATGTCCGCTGCGGTGATTGCTCCCCCGTCAACGATTCCATGTTGGTA 605
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 602 GGCCACAAGGATTATGTCCGCTGCGGTGATTGCTCGCCCGTCAACGATTCAATGTTGGTA 661
Query 606 ACTGGCTCTTACGATCACACGGTGAAGGTGTGGGACACCAGAGTCCACAAGTCCAAATGG 665
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 662 ACAGGCTCTTACGATCACACGGTGAAGGTGTGGGACGCCAGAGTCCACACGTCCAATTGG 721
Query 666 ATTGCCGAGATCAACCACGGACTCCCAGTGGAGGACGTCGTATACCTGCCTTCTGGTGGA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 ATTGCCGAGATCAACCACGGACTCCCAGTGGAGGACGTCGTATACCTGCCTTCCGGTGGA 781
Query 726 ATGATTGCAACCGCCGGTGGGAACAGCGTCAAGGTTTGGGACTTGATCGGAGGCGGGAAG 785
|||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 782 TTGATCGCAACCGCTGGTGGCAACAGCGTCAAGGTATGGGATTTGATCGGAGGCGGGAAG 841
Query 786 ATGGTTTGCTCAATGGAGAGTCACAACAAGACTGTCACGTCTCTCTGCGTTG-GTAGACT 844
||||||||||| |||||||||||||||||||| |||||||||||| |||||| | ||| |
Sbjct 842 ATGGTTTGCTCCATGGAGAGTCACAACAAGACCGTCACGTCTCTCCGCGTTGCG-AGAAT 900
Query 845 GGAATCCGCTGAGACTCGACTTGTTAGCGTTGCTTTGGACGGATACATGAAAGTGTTTGA 904
|||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 901 GGAATCGGCTGAGAGTCGACTTGTGAGCGTTGCTTTGGACGGATACATGAAAGTCTTCGA 960
Query 905 TTACGGGAGAGCAAAGGTTACTTACTCTATGAGGTTTCCAGCTCCTCTCATGTCTCTTGG 964
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 961 TTACGGGAGAGCAAAGGTGACTTACTCTATGAGGTTTCCTGCTCCTCTCATGTCTCTTGG 1020
Query 965 CCTTTCCCCCGATGGTTCCACTCGGGTGATCGGAGGGTCTAATGGCATGGTCTTTGCCGG 1024
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1021 CCTTTCCCCCGATGGTTCCACTCGGGTAATCGGAGGGTCTAATGGCATGGTGTTTGCCGG 1080
Query 1025 TAAGAAGAAGCTGAGAGTTGTTGTTGGA-G--AGAAGAAAAGTTTGAGTCTTTGGAGTGT 1081
|||||||||| |||||| |||||||||| | ||||||||||||||| ||| |||||| |
Sbjct 1081 TAAGAAGAAGGTGAGAGATGTTGTTGGAGGACAGAAGAAAAGTTTGAATCTCTGGAGTCT 1140
Query 1082 GAGGAGCCAAGTGGATGAGACTAGGAGAAGGGCACTGAGGCCGACGTATTTCAGGTACTT 1141
|| ||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1141 GATAAGCGATGTGGATGAGAGTAGGAGAAGGGCACTGAGGCCTACGTATTTCAGGTACTT 1200
Query 1142 CCAGAGAGGGCAGAGCGAGAAGCCATCCGAAGAGGATTACTTGGTCAAGGAGAAGAAAGG 1201
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1201 CCAGAGAGGGCAGAGCGAGAAGCCATCCAAAGATGATTACTTGGTCAAGGAGAAGAAAGG 1260
Query 1202 ATTGAAGCTGACAAGACACGACAAGCTCTTGAAGAAGTTCAGGCATAAGGAAGCTCTGGT 1261
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTGAAGCTGACGAGACACGATAAGCTCTTGAAGAAGTTCAGGCATAAGGAAGCTCTGGT 1320
Query 1262 CTCGGTGTTGGAGGAGAAGAAACCGGCCAATGTTGTCGCAGTGATGGAAGAATTAGTGGC 1321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1321 CTCGGTGTTGGAGGAGAAGAAACCGGCCAATGTTGTGGCAGTGATGGAAGAATTAGTGGC 1380
Query 1322 GAGGAGGAAGCTGATGAAGTGCGTGTCGAATATGGAGGAAGGCGAGTTGGGAATGCTGCT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GAGGAGGAAGCTGATGAAGTGCGTGTCGAATATGGAGGAAGGCGAGTTGGGAATGCTGCT 1440
Query 1382 AGGTTTCTTACAAAGGTACTGCACTGTGCAGAGGTATTCAGGATTGTTGATGGGATTGAC 1441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGGCTTCTTACAAAGGTACTGCACTGTGCAGAGGTATTCAGGATTGTTGATGGGATTGAC 1500
Query 1442 GAAGAAGGTTTTGGAGACGAGAGCTGAGGACATTAAGGGTAAGAAGGAGTTTACAGGTCT 1501
||||||||||||||||||||||||||| ||||| |||||||| || ||||||| ||| ||
Sbjct 1501 GAAGAAGGTTTTGGAGACGAGAGCTGAAGACATCAAGGGTAAAAACGAGTTTAAAGGGCT 1560
Query 1502 TCTCAGGAACTTGAAGAGGGAGGTTAATCAGGAGATTAGGATACAACAGTCTCTTCTAGA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TCTCAGGAACTTGAAGAGGGAGGTTAATCAGGAGATTAGGATACAACAGTCTCTTCTAGA 1620
Query 1562 GATTCAGGGTGTTATTGCTCCTTTAATGAGAATTGCTGGTAGAAGTTGATCAAATCAAT- 1620
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1621 GATTCAGGGTGTTATTGCTCCTTTGATGAGAATTGCGGGTAGAAGTTGATCTAATCAATA 1680
Query 1621 TCA-A-GTTTTGT 1631
||| | |||||||
Sbjct 1681 TCACAAGTTTTGT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5