BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935835

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01300.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   612    1e-174


> AT2G01300.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G15010.1); 
Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151057-151729 
REVERSE LENGTH=673
Length=673

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 443/495 (89%), Gaps = 15/495 (3%)
 Strand=Plus/Plus

Query  20   ACAATGGAGGCTACACTGCTTTCTTCGCCGGCTTCGATTTCACCATTCCGATTCCATCCA  79
            |||||||| ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct  36   ACAATGGAAGCTACACTGTTTTCTTCACCGCCTTCGATTTCACCACTCCGATTCCATCCA  95

Query  80   CTGGTTCTTTCTCAAAGAACAACCACTTCGCAGAAGAAGAAGACGATGACGATGAGCGTC  139
            |||||||||||||||||| | | || ||| |  |||||||||| |||||||||||| |||
Sbjct  96   CTGGTTCTTTCTCAAAGAGCCATCA-TTC-C-CAAGAAGAAGAAGATGACGATGAGAGTC  152

Query  140  TCTGCT------TC-T--GGAAAAGACCATTACTACGGAGGAGGAAGATTGGTGGACGAG  190
            ||||||      || |  |||||||| |||||||| ||||||||||||||||||||||||
Sbjct  153  TCTGCTGCGGCGTCATCAGGAAAAGATCATTACTATGGAGGAGGAAGATTGGTGGACGAG  212

Query  191  AACATGATCGTTCTCAGGAAACGTATCCACGAGATGAAGATGGTTGAGCGTAACTACGAG  250
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  213  AACATGATCGTTCTTAGGAAACGTATCCACGAGATGAAGATGGTCGAGCGTAACTACGAG  272

Query  251  CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTCTACAGCAGCTACGACTCTGTTATC  310
            ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct  273  CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTTTACAACAGCTACGACTCTGTTATC  332

Query  311  TGCGACTCCGTTGGTCTTCTTCAGAGCTTGCTCATGAATTCTCGCCCCAAC-GTAGCAAT  369
            ||||||||||||||||||||||||||||| |||||||| ||||| |||| | ||||||||
Sbjct  333  TGCGACTCCGTTGGTCTTCTTCAGAGCTTCCTCATGAACTCTCGACCCA-CTGTAGCAAT  391

Query  370  CGCAACGCTGCTTTTCCTCCTCGTCAGCATTCCCGTTTCATCCACCGCGATCGCGTTTCG  429
            ||| |||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||
Sbjct  392  CGCGACGCTGCTTTTCCTCCTCGTCAGCGTTCCCGTTTCCTCCACGGTGATCGCGTTTCG  451

Query  430  TCTTCTTGACCTCTTCCATTGGCTTCTCGCCGTCGCAACATCAGCCCTCGTGACCTGATC  489
             ||| |||| || || |||||||||||||| | |||||||||||||| |||| | |||||
Sbjct  452  CCTTATTGATCTTTTGCATTGGCTTCTCGCAGCCGCAACATCAGCCCACGTGGCTTGATC  511

Query  490  TCATTCttttttttt  504
            ||||  ||||| |||
Sbjct  512  TCATA-TTTTTCTTT  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5