BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935835 Length=507 Score E Sequences producing significant alignments: (Bits) Value AT2G01300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 612 1e-174 > AT2G01300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151057-151729 REVERSE LENGTH=673 Length=673 Score = 612 bits (331), Expect = 1e-174 Identities = 443/495 (89%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 20 ACAATGGAGGCTACACTGCTTTCTTCGCCGGCTTCGATTTCACCATTCCGATTCCATCCA 79 |||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| Sbjct 36 ACAATGGAAGCTACACTGTTTTCTTCACCGCCTTCGATTTCACCACTCCGATTCCATCCA 95 Query 80 CTGGTTCTTTCTCAAAGAACAACCACTTCGCAGAAGAAGAAGACGATGACGATGAGCGTC 139 |||||||||||||||||| | | || ||| | |||||||||| |||||||||||| ||| Sbjct 96 CTGGTTCTTTCTCAAAGAGCCATCA-TTC-C-CAAGAAGAAGAAGATGACGATGAGAGTC 152 Query 140 TCTGCT------TC-T--GGAAAAGACCATTACTACGGAGGAGGAAGATTGGTGGACGAG 190 |||||| || | |||||||| |||||||| |||||||||||||||||||||||| Sbjct 153 TCTGCTGCGGCGTCATCAGGAAAAGATCATTACTATGGAGGAGGAAGATTGGTGGACGAG 212 Query 191 AACATGATCGTTCTCAGGAAACGTATCCACGAGATGAAGATGGTTGAGCGTAACTACGAG 250 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 213 AACATGATCGTTCTTAGGAAACGTATCCACGAGATGAAGATGGTCGAGCGTAACTACGAG 272 Query 251 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTCTACAGCAGCTACGACTCTGTTATC 310 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 273 CCTCCTTCTCACTGGATGGATTGGGAGAAACGTTTTTACAACAGCTACGACTCTGTTATC 332 Query 311 TGCGACTCCGTTGGTCTTCTTCAGAGCTTGCTCATGAATTCTCGCCCCAAC-GTAGCAAT 369 ||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||||||| Sbjct 333 TGCGACTCCGTTGGTCTTCTTCAGAGCTTCCTCATGAACTCTCGACCCA-CTGTAGCAAT 391 Query 370 CGCAACGCTGCTTTTCCTCCTCGTCAGCATTCCCGTTTCATCCACCGCGATCGCGTTTCG 429 ||| |||||||||||||||||||||||| |||||||||| ||||| | |||||||||||| Sbjct 392 CGCGACGCTGCTTTTCCTCCTCGTCAGCGTTCCCGTTTCCTCCACGGTGATCGCGTTTCG 451 Query 430 TCTTCTTGACCTCTTCCATTGGCTTCTCGCCGTCGCAACATCAGCCCTCGTGACCTGATC 489 ||| |||| || || |||||||||||||| | |||||||||||||| |||| | ||||| Sbjct 452 CCTTATTGATCTTTTGCATTGGCTTCTCGCAGCCGCAACATCAGCCCACGTGGCTTGATC 511 Query 490 TCATTCttttttttt 504 |||| ||||| ||| Sbjct 512 TCATA-TTTTTCTTT 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24212858854 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5