BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935837 Length=1948 Score E Sequences producing significant alignments: (Bits) Value AT2G01330.1 | Symbols: | nucleotide binding | chr2:158277-1608... 2272 0.0 > AT2G01330.1 | Symbols: | nucleotide binding | chr2:158277-160858 REVERSE LENGTH=2079 Length=2079 Score = 2272 bits (1230), Expect = 0.0 Identities = 1387/1465 (95%), Gaps = 2/1465 (0%) Strand=Plus/Plus Query 485 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTCTGAGTTG 544 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 496 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTTTGAGTTG 555 Query 545 TGCCTTCAAGCCAACGCGACCTTTCCGAATCGCCACATGCGGTGAAGACTTCTTGGTTAA 604 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 556 TGCCTTCAAGCCAACGAGACCTTTCCGAATTGCCACATGCGGTGAAGACTTCTTGGTTAA 615 Query 605 CTTTTACGACGGTCCACCTTTTAAGTTTCACTCCTCTCACAGGGAACATTCCAACTTCGT 664 |||||| || || |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 616 CTTTTATGATGGACCACCTTTTAAGTTTCACTCTTCTCACAGGGAGCATTCCAACTTCGT 675 Query 665 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 735 Query 725 GGGTATGATTTACGATGGCAAAACTGGCGATAAAATTGGAGAACTGGCCTCAGAAGATGG 784 ||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||| Sbjct 736 GGGTATGATTTACGATGGCAAGACTGGAGATAAAGTTGGAGAATTGGCCTCAGAAGATGG 795 Query 785 GCACAAAGGCAGCATCTACGCTGTTAGCTGGAGCCCCGACAGCAAACGGGTGCTCACTGT 844 ||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 796 TCACAAAGGCAGTATCTACGCTGTTAGCTGGAGTCCTGACAGCAAACGGGTGCTTACTGT 855 Query 845 CTCTGCTGATAAGTCTGCCAAGGTATGGGAGGTAGCTGAAGATGGAACTGTTGGCTCTGT 904 |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 856 GTCTGCTGATAAGTCTGCCAAAGTATGGGAGGTAGCTGAAGATGGAACTATTGGCTCTGT 915 Query 905 AATTAAAACATTGACGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 964 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 AATTAAGACATTGTCGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 975 Query 965 TTGGCAGAACGATCATCTCATTACTGTGTCTCTTGGCGGTACCATGTCCCTCTTCTCTGC 1024 ||||||||| |||||||||||||| ||||||||||||||||| |||||| | |||||||| Sbjct 976 TTGGCAGAATGATCATCTCATTACCGTGTCTCTTGGCGGTACTATGTCCTTGTTCTCTGC 1035 Query 1025 AGATGATATGGATAAGCCTCCCTTGCTTTTATCTGGGCATATAAAGAATGTCACGTCTTT 1084 ||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 1036 AGATGATATGGATAAGCCTCCCTTGCTGTTATCTGGACATATTAAGAACGTCACTTCTTT 1095 Query 1085 GGCTGTTCTTGGAGCAAACCAGAAGACGATTCTGTCCTGTAGCTATGACGGTCTCATAGT 1144 |||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1096 GGCTGTTCTTGGGGAAAACCAGAAGACGATTCTGTCTTGTAGCTATGATGGTCTCATTGT 1155 Query 1145 CAAATGGCTACAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1204 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 CAAATGGCTAAAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1215 Query 1205 GCGATTAGCGGCTACTGAATCTAGCATTTTCCTATCCGGATTTGATAACAAGGTGTGGAG 1264 ||||||||||||||||||||||||||||||| |||| |||| |||||| | ||| ||||| Sbjct 1216 GCGATTAGCGGCTACTGAATCTAGCATTTTCATATCTGGATATGATAATATGGTTTGGAG 1275 Query 1265 AATTCCATTAACCGACAACGAATTTGGAGCTGCAGCACATGTCGATATAGGCCATCAGCC 1324 |||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 1276 AATTCCTTTAACCGACAACGGATATGGAGCTGCAGAACATGTCGATATAGGCCATCAGCC 1335 Query 1325 TCTGGACATAAGCATAGCCGTTGATTCGCCAGAATCCACATCACTAGTCTCGTTTGATTC 1384 ||||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||| Sbjct 1336 TCTGGACATAAGCATAGCCGTTGATTCTCCCGAAGCCACAGCACTAGTCTCGTTTGATTC 1395 Query 1385 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATCTGGGTTTTGCTGT 1444 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1396 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATTTGGGTTTTGCTGT 1455 Query 1445 GGCAGCCTCCGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1504 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1456 GGCAGCCTCTGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1515 Query 1505 GTTACACATATACTCAGTCTCAGGGGATAACAGCCTGAAAGAGGAAGCCGTGCTGGAGAA 1564 ||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||| Sbjct 1516 GTTACACATATACTCAGTCTCAGGGGACAACAACCTCAAAGAGGAAGCAGTCCTGGAGAA 1575 Query 1565 ACACAGAGGTGCTTTGACAGTAATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1624 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1576 ACACAGAGGTGCTTTGACAGTGATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1635 Query 1625 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGGGAGACCAAACAGGTGAAGCTAAACAA 1684 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1636 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGCGAGACCAAACAGGTGAAGCTAAACAA 1695 Query 1685 CATGCTGTTCCACACGGCTCGTATAAACTGCTTGGCATGGTCACCAAACAGCACGATGGT 1744 |||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||| Sbjct 1696 CATGTTGTTCCACACGGCTCGTATAAACAGCTTGGCATGGTCACCAAACAACAAGATGGT 1755 Query 1745 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGATAAGCCAGCTTCAAG 1804 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1756 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGACAAGCCAGCTTCAAG 1815 Query 1805 TCGCATAACCGTCA-GAAACGCGCACCTGGGCGGAGTTAATGCTGTCGGCTTCATTGATG 1863 ||||||||||| || ||||||| || || || ||||| || || |||| ||||||||||| Sbjct 1816 TCGCATAACCG-CAAGAAACGCTCATCTCGGTGGAGTGAACGCAGTCGCCTTCATTGATG 1874 Query 1864 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1875 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1934 Query 1924 AGTGACTTGTTGTTATAACCTTTTT 1948 |||||||||| ||||||| |||||| Sbjct 1935 AGTGACTTGTCGTTATAAGCTTTTT 1959 Score = 628 bits (340), Expect = 4e-179 Identities = 385/407 (95%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 13 ATTCTACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCGTCCACCGAACGAGGCC 72 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 96 ATTCCACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCCTCCACCGAACGAGGCC 155 Query 73 GTGGCATTTTGATCTCCGGCGACCCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 132 | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 156 GCGGCATTTTGATCTCCGGCGATTCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 215 Query 133 CTGTCTTCATCCGGAGCCTCCGCCAACCCCAAGACGTCCATGTTTACGGTGAACATGGCT 192 ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 216 CTGTCTTCATCCGGAGCCTCCGCCAACTCCAAGACGTCCAAGTTTACGGCGAACATGGCT 275 Query 193 ATGCTGTCACCGTTGCTCGCTACTCTCCCAACGGCGAGTGGATCGCTTCCGCTGATGTCT 252 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 276 ATGCTGTTACCGTTGCTCGCTACTCTCCCAACGGCGAATGGATCGCTTCCGCTGATGTCT 335 Query 253 CTGGTACCGTTCGCGTTTGGGGAACGCACAACGACTTCGTGCTCAAGAACGAATTCAGAG 312 ||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 336 CTGGTACTGTTCGCGTTTGGGGAACGCACAACGGCTTCGTGCTGAAGAACGAGTTCAGAG 395 Query 313 TCCTCGCTGGTCG-GATCGATGATCTCCAATGGTCTTTCGATGGGCTTCGAATTGTTGCT 371 |||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 396 TCCTTGCTGGTCGTG-TCGATGATCTCCAATGGTCTTTCGATGGACTTCGAATTGTTGCT 454 Query 372 TCCGGCGATGGAAAGGGCAAATCTTTTGTTCGAGCCTTCGCATTGGA 418 |||||||||||||| ||||||||| |||||||| ||||||||| ||| Sbjct 455 TCCGGCGATGGAAAAGGCAAATCTCTTGTTCGATCCTTCGCATGGGA 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96485447490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5