BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935837
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01330.1 | Symbols: | nucleotide binding | chr2:158277-1608... 2272 0.0
> AT2G01330.1 | Symbols: | nucleotide binding | chr2:158277-160858
REVERSE LENGTH=2079
Length=2079
Score = 2272 bits (1230), Expect = 0.0
Identities = 1387/1465 (95%), Gaps = 2/1465 (0%)
Strand=Plus/Plus
Query 485 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTCTGAGTTG 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 496 ATGGGACTCTGGCAATACAATGGGGGATTTTGATGGCCATTCTCGTAGGGTTTTGAGTTG 555
Query 545 TGCCTTCAAGCCAACGCGACCTTTCCGAATCGCCACATGCGGTGAAGACTTCTTGGTTAA 604
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 556 TGCCTTCAAGCCAACGAGACCTTTCCGAATTGCCACATGCGGTGAAGACTTCTTGGTTAA 615
Query 605 CTTTTACGACGGTCCACCTTTTAAGTTTCACTCCTCTCACAGGGAACATTCCAACTTCGT 664
|||||| || || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 616 CTTTTATGATGGACCACCTTTTAAGTTTCACTCTTCTCACAGGGAGCATTCCAACTTCGT 675
Query 665 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CAACTGCATCAGATATTCACCTGATGGTACTAAATTCATTACCGTAAGCTCTGACAAAAA 735
Query 725 GGGTATGATTTACGATGGCAAAACTGGCGATAAAATTGGAGAACTGGCCTCAGAAGATGG 784
||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||
Sbjct 736 GGGTATGATTTACGATGGCAAGACTGGAGATAAAGTTGGAGAATTGGCCTCAGAAGATGG 795
Query 785 GCACAAAGGCAGCATCTACGCTGTTAGCTGGAGCCCCGACAGCAAACGGGTGCTCACTGT 844
||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 796 TCACAAAGGCAGTATCTACGCTGTTAGCTGGAGTCCTGACAGCAAACGGGTGCTTACTGT 855
Query 845 CTCTGCTGATAAGTCTGCCAAGGTATGGGAGGTAGCTGAAGATGGAACTGTTGGCTCTGT 904
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 856 GTCTGCTGATAAGTCTGCCAAAGTATGGGAGGTAGCTGAAGATGGAACTATTGGCTCTGT 915
Query 905 AATTAAAACATTGACGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 964
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AATTAAGACATTGTCGTTTATGGAATCTGGTGGAGCAGAAGACATGCTTGTGGGATGTCT 975
Query 965 TTGGCAGAACGATCATCTCATTACTGTGTCTCTTGGCGGTACCATGTCCCTCTTCTCTGC 1024
||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||||||||
Sbjct 976 TTGGCAGAATGATCATCTCATTACCGTGTCTCTTGGCGGTACTATGTCCTTGTTCTCTGC 1035
Query 1025 AGATGATATGGATAAGCCTCCCTTGCTTTTATCTGGGCATATAAAGAATGTCACGTCTTT 1084
||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||
Sbjct 1036 AGATGATATGGATAAGCCTCCCTTGCTGTTATCTGGACATATTAAGAACGTCACTTCTTT 1095
Query 1085 GGCTGTTCTTGGAGCAAACCAGAAGACGATTCTGTCCTGTAGCTATGACGGTCTCATAGT 1144
|||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1096 GGCTGTTCTTGGGGAAAACCAGAAGACGATTCTGTCTTGTAGCTATGATGGTCTCATTGT 1155
Query 1145 CAAATGGCTACAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1204
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 CAAATGGCTAAAAGGGGTTGGGTACAGTTGCAAGTTACAAATGAAAGACACCAAAATCAA 1215
Query 1205 GCGATTAGCGGCTACTGAATCTAGCATTTTCCTATCCGGATTTGATAACAAGGTGTGGAG 1264
||||||||||||||||||||||||||||||| |||| |||| |||||| | ||| |||||
Sbjct 1216 GCGATTAGCGGCTACTGAATCTAGCATTTTCATATCTGGATATGATAATATGGTTTGGAG 1275
Query 1265 AATTCCATTAACCGACAACGAATTTGGAGCTGCAGCACATGTCGATATAGGCCATCAGCC 1324
|||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1276 AATTCCTTTAACCGACAACGGATATGGAGCTGCAGAACATGTCGATATAGGCCATCAGCC 1335
Query 1325 TCTGGACATAAGCATAGCCGTTGATTCGCCAGAATCCACATCACTAGTCTCGTTTGATTC 1384
||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||
Sbjct 1336 TCTGGACATAAGCATAGCCGTTGATTCTCCCGAAGCCACAGCACTAGTCTCGTTTGATTC 1395
Query 1385 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATCTGGGTTTTGCTGT 1444
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1396 CGGAGTTGTATTGCTCAATGGTCTGAACATTTTGAGCAAGATCGATTTGGGTTTTGCTGT 1455
Query 1445 GGCAGCCTCCGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1504
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GGCAGCCTCTGTGATCTCACCTGACGGGAAAGAAGCGATTGTAGGAGGGCAAGACGGGAA 1515
Query 1505 GTTACACATATACTCAGTCTCAGGGGATAACAGCCTGAAAGAGGAAGCCGTGCTGGAGAA 1564
||||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||||||
Sbjct 1516 GTTACACATATACTCAGTCTCAGGGGACAACAACCTCAAAGAGGAAGCAGTCCTGGAGAA 1575
Query 1565 ACACAGAGGTGCTTTGACAGTAATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1624
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1576 ACACAGAGGTGCTTTGACAGTGATACGTTACTCTCCTGACTTAACAATGTTTGCTTCTGG 1635
Query 1625 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGGGAGACCAAACAGGTGAAGCTAAACAA 1684
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1636 TGATGCCAACCGCGAAGCTGTAGTCTGGGATCGCGAGACCAAACAGGTGAAGCTAAACAA 1695
Query 1685 CATGCTGTTCCACACGGCTCGTATAAACTGCTTGGCATGGTCACCAAACAGCACGATGGT 1744
|||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 1696 CATGTTGTTCCACACGGCTCGTATAAACAGCTTGGCATGGTCACCAAACAACAAGATGGT 1755
Query 1745 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGATAAGCCAGCTTCAAG 1804
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1756 AGCCACAGGGTCCATAGACACTTGCGTCATTGTATATGAAGTGGACAAGCCAGCTTCAAG 1815
Query 1805 TCGCATAACCGTCA-GAAACGCGCACCTGGGCGGAGTTAATGCTGTCGGCTTCATTGATG 1863
||||||||||| || ||||||| || || || ||||| || || |||| |||||||||||
Sbjct 1816 TCGCATAACCG-CAAGAAACGCTCATCTCGGTGGAGTGAACGCAGTCGCCTTCATTGATG 1874
Query 1864 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 ATTGCACCGTAGCAAGTTCCGGAGAAGACGCTTCCGTTCGTTTGTGGCATATCGAACCTC 1934
Query 1924 AGTGACTTGTTGTTATAACCTTTTT 1948
|||||||||| ||||||| ||||||
Sbjct 1935 AGTGACTTGTCGTTATAAGCTTTTT 1959
Score = 628 bits (340), Expect = 4e-179
Identities = 385/407 (95%), Gaps = 2/407 (0%)
Strand=Plus/Plus
Query 13 ATTCTACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCGTCCACCGAACGAGGCC 72
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 96 ATTCCACGATGGCGAAACTCCTCGAGACCTTTCCTTGTGTTCCCTCCACCGAACGAGGCC 155
Query 73 GTGGCATTTTGATCTCCGGCGACCCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 132
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 156 GCGGCATTTTGATCTCCGGCGATTCCAAATCCGACACCATTCTCTACTGCAACGGCCGCT 215
Query 133 CTGTCTTCATCCGGAGCCTCCGCCAACCCCAAGACGTCCATGTTTACGGTGAACATGGCT 192
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 216 CTGTCTTCATCCGGAGCCTCCGCCAACTCCAAGACGTCCAAGTTTACGGCGAACATGGCT 275
Query 193 ATGCTGTCACCGTTGCTCGCTACTCTCCCAACGGCGAGTGGATCGCTTCCGCTGATGTCT 252
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 276 ATGCTGTTACCGTTGCTCGCTACTCTCCCAACGGCGAATGGATCGCTTCCGCTGATGTCT 335
Query 253 CTGGTACCGTTCGCGTTTGGGGAACGCACAACGACTTCGTGCTCAAGAACGAATTCAGAG 312
||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct 336 CTGGTACTGTTCGCGTTTGGGGAACGCACAACGGCTTCGTGCTGAAGAACGAGTTCAGAG 395
Query 313 TCCTCGCTGGTCG-GATCGATGATCTCCAATGGTCTTTCGATGGGCTTCGAATTGTTGCT 371
|||| |||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 396 TCCTTGCTGGTCGTG-TCGATGATCTCCAATGGTCTTTCGATGGACTTCGAATTGTTGCT 454
Query 372 TCCGGCGATGGAAAGGGCAAATCTTTTGTTCGAGCCTTCGCATTGGA 418
|||||||||||||| ||||||||| |||||||| ||||||||| |||
Sbjct 455 TCCGGCGATGGAAAAGGCAAATCTCTTGTTCGATCCTTCGCATGGGA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96485447490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5