BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935848
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 486 1e-136
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 477 6e-134
AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 261 7e-69
AT5G28464.1 | Symbols: | transposable element gene | chr5:1039... 95.3 7e-19
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 486 bits (263), Expect = 1e-136
Identities = 614/772 (80%), Gaps = 70/772 (9%)
Strand=Plus/Plus
Query 12 GCTTGAA-TGATGAAGACTCGTGGTGGAAAAGGCAAGAGAGG--AA-G--GGG-ATCGAA 64
|||| || ||||||||||||||||||| |||||||||||| || | ||| || |||
Sbjct 4 GCTTCAAGTGATGAAGACTCGTGGTGG---AGGCAAGAGAGGAAAAGGAAGGGTATAGAA 60
Query 65 GATTcccccccAAAATCGACCCACTTCTTCCCAGCCTGTA-CGAGTTG-AATCGAAGACC 122
|||| ||||| |||| |||||||||||||||| || | ||||||| ||| |||||||
Sbjct 61 GATT--CCCCC-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGTTGAAAT-GAAGACC 114
Query 123 ------TTGAATCGAAGACCTAGGGGTCTTCCCAGCCATTACGAGTTCACGCCGGCGAAT 176
||||||||| | || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 115 AAGGAGTTGAATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGTTCACGCCGGCGAAT 174
Query 177 CGTCAAGCCCCACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCA 236
||||||| || |||||||||||||||| ||| | ||||||||| |||||||| ||| |
Sbjct 175 CGTCAAGTCCTGCTTCAAGATTCTGAACGAGATCTGATTGCACATCCTCCAACAAGTCAA 234
Query 237 ACCATCAGGGACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGTGAAGGATCTCCTCGC 296
||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||| |
Sbjct 235 ACCGTGAGGGACTATCCTCCTCTGACGCAAC-TTTCCAGTCAGGCGAAGGATCTCCTTGT 293
Query 297 GGATCTGGCTCGACTCCATTTCGAGCATC-CGGATCGACTCAACCTAGATCTGGA-GGA- 353
|||| | | | || | |||| | ||| | || ||| | ||||||||| ||
Sbjct 294 GGATATAGAT---CT-C--TTCGGGGATCTC-CTTCTCCTC--GC-AGATCTGGATCGAC 343
Query 354 TCTG-TT----CAT-CGTCTAGCCTCCAATC-AG-TCTCCAGCG-CCGGTTCAACGGGAA 404
|||| || ||| || || | || ||| | || |||| || | | |||| | |
Sbjct 344 TCTGTTTCGAGCATCCGGCTCGACT-CAACCTAGATCTCGAG-GATCTATTCATCATCTA 401
Query 405 G-CT-TAC----AATCAGTCTCCAGCGCCGGTTCAACGGGAAGCCTCCAATCAGTCTCCA 458
| || || || || ||||||| | | ||||||| |||||||||||||||||||||
Sbjct 402 GCCTCCACGTTGAAACAATCTCCAGAGGCAGTTCAACCTGAAGCCTCCAATCAGTCTCCA 461
Query 459 GCGTCGGTTCAACCG-GAAGCCTCCAATCCTCCAC-CTCGGCAGGCGTCAAATCCTCCAC 516
||| |||||||| || ||||| |||||||||| || | || | ||||||||||||||||
Sbjct 462 GCGGCGGTTCAA-CGAGAAGCATCCAATCCTCTACTTTAGG-AAGCGTCAAATCCTCCAC 519
Query 517 CTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATG 576
|||||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 520 CTCGAGTCTTTGTATCACATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATG 579
Query 577 AAGATGAGGAAGCTGAG---G---CTAATTATGAAAGGGAATCAACTCTTCCTGAAGATT 630
||||||||||||||||| | || ||| |||||||||||||||| | ||||||||||
Sbjct 580 AAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGAAAGGGAATCAACTATCCCTGAAGATT 639
Query 631 CGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGCCAGGACGTGAGAAGTTTACAACGGTC 689
|||||| ||||| ||||||||||| | |||||| | | |||||| | ||||||||||
Sbjct 640 TGCTTGCAACTCTATATGAGTTGCTTGCC-CAGCCAAGCCATGAGAAATATACAACGGTC 698
Query 690 ATCTCTCCCACATTTGAGCCTGGAAC-CTATTGGTAAGCTGAGTAGATTAGG 740
|||||||| | ||| |||||| ||| |||| ||| ||||||||| ||||||
Sbjct 699 ATCTCTCCTAAATT-GAGCCTCAAACTCTAT-GGTTAGCTGAGTATATTAGG 748
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 477 bits (258), Expect = 6e-134
Identities = 601/755 (80%), Gaps = 70/755 (9%)
Strand=Plus/Plus
Query 21 ATGAAGAC-TCGTGGTGGAAAAGGCAAGAGAGG-A-AGG--G-G-ATCGAAGATTccccc 73
|||||||| | ||||||| |||||||||||| | ||| | | ||| || ||| |||
Sbjct 1 ATGAAGACAT-GTGGTGG---AGGCAAGAGAGGAAGAGGAAGTGTATCAAACATT--CCC 54
Query 74 ccAAAATCGACCCACTTCTTCCCAGCCTGTACGAGTTGAATCGAAGAC-----C-TTGAA 127
| |||||||||||||||||||||||| || ||||||||| ||||||| | | ||
Sbjct 55 TC-AAATCGACCCACTTCTTCCCAGCCAGTTCGAGTTGAACCGAAGACTAGGGCATCAAA 113
Query 128 TCGAAGACCTAGGGGTCTTCCCAGCCATTACGAGTTCACGCCGGCGAATCGTCAAGCCCC 187
|||||| || || |||| ||||||||| ||||||||||||| || || ||||| ||||||
Sbjct 114 TCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCCCC 173
Query 188 ACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGA 247
|||||||||| |||||| | |||| |||||| ||| ||||||||||| || |||||||
Sbjct 174 GCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGGGA 233
Query 248 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGTGAAGGATCTCCTCGCGGATCTGGCTC 307
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |
Sbjct 234 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTG-T- 291
Query 308 GACTCCATTTCGAGCATCCGGATCGACTCAACCTAGATCTGGAGGATCTGTTCATCGTCT 367
|||| ||| | ||| ||||||||| || | | | ||| ||| | | |||
Sbjct 292 -TCTCC---TCGTGGATCTGGATCGACT----CT-G-TTTTGAGCATCCG-GC-TCG--- 336
Query 368 AGCCTCCAATC-AG-TCTCCAGCG-CCGGTTCAACGGGAAG-CT-TA---C-A-ATCAGT 417
| || ||| | || ||| || | | ||||| || || || || | | | || |
Sbjct 337 A--CT-CAACCTAGATCTGGAG-GATCTGTTCATCGTCTAGCCTCTACGGCGAGA-CAAT 391
Query 418 CTCCAGCGCCGGTTCAACGGGAA-GCCTCCAATCAGTCTCCAGCGTC-GGTTCAACCG-G 474
|||||||| |||||| || ||| ||||||||||||||| |||| | ||||||| || |
Sbjct 392 CTCCAGCGGCGGTTC-ACAAGAATGCCTCCAATCAGTCTATAGCG-CTGGTTCAA-CGAG 448
Query 475 AAGCCTCCAATCCTCCACCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCAC 534
|||| |||||||||| || || ||| || |||||||||| ||||||||||| |||||| |
Sbjct 449 AAGCATCCAATCCTCTACTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTC 508
Query 535 ATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG- 593
|||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct 509 ATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGT 568
Query 594 --G---CTAAT-TATGAAAGGGAATCAACTCTTCCTGAAGATTCGCTTGCTACTCTCCAT 647
| || || | |||||||||||||||||| ||||||| || |||||| | ||| |||
Sbjct 569 TTGTGGCTGATCT-TGAAAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACAT 627
Query 648 GAGTTGCTT-CTTCAGCCAGGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGA 706
|| ||||| | |||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 628 GACATGCTTGCC-CAGCCAGGCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGA 686
Query 707 GCCTGGAACC-TATTGGTAAGCTGAGTAGATTAGG 740
|||| |||| ||| ||||||||||| | ||||||
Sbjct 687 GCCTCTAACCGTAT-GGTAAGCTGAGAATATTAGG 720
> AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514
REVERSE LENGTH=1963
Length=1963
Score = 261 bits (141), Expect = 7e-69
Identities = 200/228 (88%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 147 CCCAGCCATTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 204
|||||||| || || ||||||||| || |||||||| || ||||||||||| |||| |
Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59
Query 205 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 264
|| | ||||||||||| |||| |||||| | || |||| |||||||||||||||||||
Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118
Query 265 AACTTTTCCAGTCAGGTGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT 324
|||||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 119 AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT 178
Query 325 CCGGATCGACTCAACCTAGATCTGGAGGATCTGTTCATCGTCTAGCCT 372
||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 179 CCGGATCGACTCAACCTAGATTTGGAGGATCTGTTCATCGTCTA-CCT 225
> AT5G28464.1 | Symbols: | transposable element gene | chr5:10398191-10400049
FORWARD LENGTH=1859
Length=1859
Score = 95.3 bits (51), Expect = 7e-19
Identities = 77/89 (87%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 285 GGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGA 344
||||||||| | || ||| | || |||||||||||||||||||||||||||||| |||||
Sbjct 107 GGATCTCCTTGAGGTTCTAGATCAACTCCATTTCGAGCATCCGGATCGACTCAATCTAGA 166
Query 345 TCTGGAGGATCTGTTCATCGTCTAGCCTC 373
| |||||||| ||||| ||||||||||
Sbjct 167 TTTGGAGGATATGTTC---GTCTAGCCTC 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5