BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935848 Length=745 Score E Sequences producing significant alignments: (Bits) Value AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 486 1e-136 AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 477 6e-134 AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 261 7e-69 AT5G28464.1 | Symbols: | transposable element gene | chr5:1039... 95.3 7e-19 > AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916 FORWARD LENGTH=2229 Length=2229 Score = 486 bits (263), Expect = 1e-136 Identities = 614/772 (80%), Gaps = 70/772 (9%) Strand=Plus/Plus Query 12 GCTTGAA-TGATGAAGACTCGTGGTGGAAAAGGCAAGAGAGG--AA-G--GGG-ATCGAA 64 |||| || ||||||||||||||||||| |||||||||||| || | ||| || ||| Sbjct 4 GCTTCAAGTGATGAAGACTCGTGGTGG---AGGCAAGAGAGGAAAAGGAAGGGTATAGAA 60 Query 65 GATTcccccccAAAATCGACCCACTTCTTCCCAGCCTGTA-CGAGTTG-AATCGAAGACC 122 |||| ||||| |||| |||||||||||||||| || | ||||||| ||| ||||||| Sbjct 61 GATT--CCCCC-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGTTGAAAT-GAAGACC 114 Query 123 ------TTGAATCGAAGACCTAGGGGTCTTCCCAGCCATTACGAGTTCACGCCGGCGAAT 176 ||||||||| | || ||||| ||||||||||| ||||||||||||||||||||| Sbjct 115 AAGGAGTTGAATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGTTCACGCCGGCGAAT 174 Query 177 CGTCAAGCCCCACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCA 236 ||||||| || |||||||||||||||| ||| | ||||||||| |||||||| ||| | Sbjct 175 CGTCAAGTCCTGCTTCAAGATTCTGAACGAGATCTGATTGCACATCCTCCAACAAGTCAA 234 Query 237 ACCATCAGGGACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGTGAAGGATCTCCTCGC 296 ||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||| | Sbjct 235 ACCGTGAGGGACTATCCTCCTCTGACGCAAC-TTTCCAGTCAGGCGAAGGATCTCCTTGT 293 Query 297 GGATCTGGCTCGACTCCATTTCGAGCATC-CGGATCGACTCAACCTAGATCTGGA-GGA- 353 |||| | | | || | |||| | ||| | || ||| | ||||||||| || Sbjct 294 GGATATAGAT---CT-C--TTCGGGGATCTC-CTTCTCCTC--GC-AGATCTGGATCGAC 343 Query 354 TCTG-TT----CAT-CGTCTAGCCTCCAATC-AG-TCTCCAGCG-CCGGTTCAACGGGAA 404 |||| || ||| || || | || ||| | || |||| || | | |||| | | Sbjct 344 TCTGTTTCGAGCATCCGGCTCGACT-CAACCTAGATCTCGAG-GATCTATTCATCATCTA 401 Query 405 G-CT-TAC----AATCAGTCTCCAGCGCCGGTTCAACGGGAAGCCTCCAATCAGTCTCCA 458 | || || || || ||||||| | | ||||||| ||||||||||||||||||||| Sbjct 402 GCCTCCACGTTGAAACAATCTCCAGAGGCAGTTCAACCTGAAGCCTCCAATCAGTCTCCA 461 Query 459 GCGTCGGTTCAACCG-GAAGCCTCCAATCCTCCAC-CTCGGCAGGCGTCAAATCCTCCAC 516 ||| |||||||| || ||||| |||||||||| || | || | |||||||||||||||| Sbjct 462 GCGGCGGTTCAA-CGAGAAGCATCCAATCCTCTACTTTAGG-AAGCGTCAAATCCTCCAC 519 Query 517 CTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATG 576 |||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 520 CTCGAGTCTTTGTATCACATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATG 579 Query 577 AAGATGAGGAAGCTGAG---G---CTAATTATGAAAGGGAATCAACTCTTCCTGAAGATT 630 ||||||||||||||||| | || ||| |||||||||||||||| | |||||||||| Sbjct 580 AAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGAAAGGGAATCAACTATCCCTGAAGATT 639 Query 631 CGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGCCAGGACGTGAGAAGTTTACAACGGTC 689 |||||| ||||| ||||||||||| | |||||| | | |||||| | |||||||||| Sbjct 640 TGCTTGCAACTCTATATGAGTTGCTTGCC-CAGCCAAGCCATGAGAAATATACAACGGTC 698 Query 690 ATCTCTCCCACATTTGAGCCTGGAAC-CTATTGGTAAGCTGAGTAGATTAGG 740 |||||||| | ||| |||||| ||| |||| ||| ||||||||| |||||| Sbjct 699 ATCTCTCCTAAATT-GAGCCTCAAACTCTAT-GGTTAGCTGAGTATATTAGG 748 > AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991 FORWARD LENGTH=2284 Length=2284 Score = 477 bits (258), Expect = 6e-134 Identities = 601/755 (80%), Gaps = 70/755 (9%) Strand=Plus/Plus Query 21 ATGAAGAC-TCGTGGTGGAAAAGGCAAGAGAGG-A-AGG--G-G-ATCGAAGATTccccc 73 |||||||| | ||||||| |||||||||||| | ||| | | ||| || ||| ||| Sbjct 1 ATGAAGACAT-GTGGTGG---AGGCAAGAGAGGAAGAGGAAGTGTATCAAACATT--CCC 54 Query 74 ccAAAATCGACCCACTTCTTCCCAGCCTGTACGAGTTGAATCGAAGAC-----C-TTGAA 127 | |||||||||||||||||||||||| || ||||||||| ||||||| | | || Sbjct 55 TC-AAATCGACCCACTTCTTCCCAGCCAGTTCGAGTTGAACCGAAGACTAGGGCATCAAA 113 Query 128 TCGAAGACCTAGGGGTCTTCCCAGCCATTACGAGTTCACGCCGGCGAATCGTCAAGCCCC 187 |||||| || || |||| ||||||||| ||||||||||||| || || ||||| |||||| Sbjct 114 TCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCCCC 173 Query 188 ACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGA 247 |||||||||| |||||| | |||| |||||| ||| ||||||||||| || ||||||| Sbjct 174 GCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGGGA 233 Query 248 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGTGAAGGATCTCCTCGCGGATCTGGCTC 307 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | | Sbjct 234 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTG-T- 291 Query 308 GACTCCATTTCGAGCATCCGGATCGACTCAACCTAGATCTGGAGGATCTGTTCATCGTCT 367 |||| ||| | ||| ||||||||| || | | | ||| ||| | | ||| Sbjct 292 -TCTCC---TCGTGGATCTGGATCGACT----CT-G-TTTTGAGCATCCG-GC-TCG--- 336 Query 368 AGCCTCCAATC-AG-TCTCCAGCG-CCGGTTCAACGGGAAG-CT-TA---C-A-ATCAGT 417 | || ||| | || ||| || | | ||||| || || || || | | | || | Sbjct 337 A--CT-CAACCTAGATCTGGAG-GATCTGTTCATCGTCTAGCCTCTACGGCGAGA-CAAT 391 Query 418 CTCCAGCGCCGGTTCAACGGGAA-GCCTCCAATCAGTCTCCAGCGTC-GGTTCAACCG-G 474 |||||||| |||||| || ||| ||||||||||||||| |||| | ||||||| || | Sbjct 392 CTCCAGCGGCGGTTC-ACAAGAATGCCTCCAATCAGTCTATAGCG-CTGGTTCAA-CGAG 448 Query 475 AAGCCTCCAATCCTCCACCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCAC 534 |||| |||||||||| || || ||| || |||||||||| ||||||||||| |||||| | Sbjct 449 AAGCATCCAATCCTCTACTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTC 508 Query 535 ATCACAGCTCTCAAGCTCAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG- 593 |||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||| Sbjct 509 ATCACAGCTCTCAAGCTCAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGT 568 Query 594 --G---CTAAT-TATGAAAGGGAATCAACTCTTCCTGAAGATTCGCTTGCTACTCTCCAT 647 | || || | |||||||||||||||||| ||||||| || |||||| | ||| ||| Sbjct 569 TTGTGGCTGATCT-TGAAAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACAT 627 Query 648 GAGTTGCTT-CTTCAGCCAGGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGA 706 || ||||| | |||||||| |||||||||| ||||||||| ||||||||||||||||| Sbjct 628 GACATGCTTGCC-CAGCCAGGCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGA 686 Query 707 GCCTGGAACC-TATTGGTAAGCTGAGTAGATTAGG 740 |||| |||| ||| ||||||||||| | |||||| Sbjct 687 GCCTCTAACCGTAT-GGTAAGCTGAGAATATTAGG 720 > AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514 REVERSE LENGTH=1963 Length=1963 Score = 261 bits (141), Expect = 7e-69 Identities = 200/228 (88%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 147 CCCAGCCATTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 204 |||||||| || || ||||||||| || |||||||| || ||||||||||| |||| | Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59 Query 205 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 264 || | ||||||||||| |||| |||||| | || |||| ||||||||||||||||||| Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118 Query 265 AACTTTTCCAGTCAGGTGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT 324 |||||||||| ||||| |||||||||||| |||||||||| |||| |||||||||||||| Sbjct 119 AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT 178 Query 325 CCGGATCGACTCAACCTAGATCTGGAGGATCTGTTCATCGTCTAGCCT 372 ||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 179 CCGGATCGACTCAACCTAGATTTGGAGGATCTGTTCATCGTCTA-CCT 225 > AT5G28464.1 | Symbols: | transposable element gene | chr5:10398191-10400049 FORWARD LENGTH=1859 Length=1859 Score = 95.3 bits (51), Expect = 7e-19 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 285 GGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGA 344 ||||||||| | || ||| | || |||||||||||||||||||||||||||||| ||||| Sbjct 107 GGATCTCCTTGAGGTTCTAGATCAACTCCATTTCGAGCATCCGGATCGACTCAATCTAGA 166 Query 345 TCTGGAGGATCTGTTCATCGTCTAGCCTC 373 | |||||||| ||||| |||||||||| Sbjct 167 TTTGGAGGATATGTTC---GTCTAGCCTC 192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36168585840 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5