BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935858
Length=356
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01505.1 | Symbols: CLE16 | CLAVATA3/ESR-RELATED 16 | chr2:2... 353 5e-97
> AT2G01505.1 | Symbols: CLE16 | CLAVATA3/ESR-RELATED 16 | chr2:228745-229237
REVERSE LENGTH=493
Length=493
Score = 353 bits (191), Expect = 5e-97
Identities = 246/270 (91%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 98 CCGCCGTGTTCTTCTGGGGAATC-TTGATCTTTGCTCAGTTTGGTTTTTCTTCATCAGCT 156
|||| ||||||||||| |||||| ||| | ||||||||||||||| ||||||||||||||
Sbjct 65 CCGCTGTGTTCTTCTGTGGAATCTTTG-TTTTTGCTCAGTTTGGTATTTCTTCATCAGCT 123
Query 157 CTTTTTG---C--A--AC--TCCTTCACTTCCGAGAAAGGCTGGTCCTTTCCATGAAATG 207
||||||| | | || ||||||||| |||||||||||||||| |||||| ||||||
Sbjct 124 CTTTTTGCTCCTGATCACTATCCTTCACTACCGAGAAAGGCTGGTCATTTCCACGAAATG 183
Query 208 GCGTCGTTTCAAGCTCCCAAAGCCT-CAATGTCATTCACGGGTCAACGTCGAGAAGAAGA 266
||||||||||||||||| |||| || || |||| ||||||||||||||||||||||||||
Sbjct 184 GCGTCGTTTCAAGCTCCGAAAG-CTACAGTGTCGTTCACGGGTCAACGTCGAGAAGAAGA 242
Query 267 AAACAGAGATGACGTTTATAAAGACGACAAGAGATTAGTTCACACAGGTCCAAATCCTCT 326
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AAACAGAGATGAAGTTTATAAAGACGACAAGAGATTAGTTCACACAGGTCCAAATCCTCT 302
Query 327 TCACAACTGAAACACTAATTAGCAACACGT 356
||||||||||||||||||||||||||||||
Sbjct 303 TCACAACTGAAACACTAATTAGCAACACGT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16688892668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5