BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935860
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235... 822 0.0
AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 651 0.0
AT2G01530.1 | Symbols: MLP329 | MLP-like protein 329 | chr2:239... 601 2e-171
AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 257 6e-68
> AT2G01520.1 | Symbols: MLP328 | MLP-like protein 328 | chr2:235925-237147
FORWARD LENGTH=789
Length=789
Score = 822 bits (445), Expect = 0.0
Identities = 472/485 (97%), Gaps = 2/485 (0%)
Strand=Plus/Plus
Query 17 AGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCGGCGGAG 76
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 62 AGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCTGAG 121
Query 77 AAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGATGCCGTCGGCCACCAC 136
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 122 AAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGACGCCATCGGCCACCAC 181
Query 137 ATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGG 196
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 ATCCAAGGTGTCACCATCCACGACGGTGAATGGGACTCCCATGGAGCCATCAAGATTTGG 241
Query 197 AACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGACGAG 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 242 AACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGATGAG 301
Query 257 AATATGGCGGTAACATTCAGAGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTAT 316
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 302 AATATGGCGGTAACGTTCAGAGGACTCGAAGGTCACGTGATGGAGCAGCTTAAAGTGTAT 361
Query 317 GACGTCATCTTTCAGTTCATTCAAAAGTCCCCTGATGATATCATCTGTAAGATCACTATG 376
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 362 GACGTCATCTTTCAGTTCATTCAAAAGTCACCTGATGATATCATCTGTAAGATCACTATG 421
Query 377 ATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCTAGCAACTACATGAAGTTCGTCAAG 436
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 422 ATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCCAGCAACTACATGAAGTTCGTCAAG 481
Query 437 AGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATC-CCCTT-CACATCAA 494
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 482 AGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATATCCCTTTCACATCAA 541
Query 495 CCCAT 499
|||||
Sbjct 542 CCCAT 546
> AT4G14060.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:8107337-8108307 FORWARD
LENGTH=673
Length=673
Score = 651 bits (352), Expect = 0.0
Identities = 455/504 (90%), Gaps = 10/504 (2%)
Strand=Plus/Plus
Query 1 GGAAGAGACA-AAAGAGAGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTT 59
|||||||| | | |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 46 GGAAGAGAGATAGAGAGAGGGAGATGGCTACGTCAGGAACATATGTGACGGAGGTTCCTT 105
Query 60 TGAAAGGATCGGCGGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCG 119
|||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 106 TGAAAGGATCAGCGGAGAAACACTACAAGCGGTGGAGGAATGAGAACCACCTTTTCCCCG 165
Query 120 ATGCCGTCGGCCACCACATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATG 179
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 166 ACGCCATCGGCCACCACATCCAAGGTGTCACCGTCCACGACGGCGAATGGGACTCCCATG 225
Query 180 GAGCCATCAAGATTTGGAACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGA 239
||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 226 GAGCCCTCAAGATTTGGAACTACACATTAGATGGGAAACCGGAGATGTTCAAGGAGAGGA 285
Query 240 GAGAGATAGACGACGAGAATATGGCGGTAACATTCAGA-GGACTAGAAGGTCACGTGATG 298
||||||||||||| || || ||||||||||| ||| | |||||||||||||||||||||
Sbjct 286 GAGAGATAGACGATGAAAACATGGCGGTAACGTTC-GTTGGACTAGAAGGTCACGTGATG 344
Query 299 GAGCAGCTTAAAGTGTATGACGTCATCTTT-CAGTTCATTCAAAAGTCCCCTGATGATAT 357
|||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||
Sbjct 345 GAGCAGCTTAAAGTGTATGATACCAT-TTTACAGTTCATTCAAAAGTCCCCGGATGATAT 403
Query 358 CATCTGTAAGATCACTATGATCTGGGAGAAGCAAAACGATGACAT-GCCTGAGCCTAGCA 416
| | || ||||||||||||| ||||||||||| | ||||||| | |||||| || ||||
Sbjct 404 CGTTTGCAAGATCACTATGACCTGGGAGAAGCGAGCCGATGAC-TCGCCTGAACCCAGCA 462
Query 417 ACTACATGAAGTTCGTCAAGAGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCT 476
||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||
Sbjct 463 ACTACATGAAGTTGGTCAAGAGTCTCGCTGCTGACATGGACGCCCACGTTCTCAAAGCCT 522
Query 477 AAATCCC-CTTCACATCAACCCAT 499
|| |||| || ||| | |||||||
Sbjct 523 AA-TCCCTCT-CACCTAAACCCAT 544
> AT2G01530.1 | Symbols: MLP329 | MLP-like protein 329 | chr2:239705-240520
FORWARD LENGTH=737
Length=737
Score = 601 bits (325), Expect = 2e-171
Identities = 425/473 (90%), Gaps = 8/473 (2%)
Strand=Plus/Plus
Query 19 AGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCGGCGGAGAA 78
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 107 AGAGATGGCGACATCGGGAACATATGTGACGGAGGTTCCATTGAAAGGATCGGCGGATAA 166
Query 79 ACACTACAAGCGGTGGAGGAG-TGAGAACCACCTCTTCCCCGATGCCGTCGGCCACCACA 137
||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 167 ACACTACAAGCGGTGGA-GAGATGAGAACCACCTCTTCCCCGATGCCATCGGCCACCACA 225
Query 138 TCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATGGAGCCATCAAGATTTGGA 197
||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 226 TCCAAGGTGTCACTGTCCACGACGGTGAATGGGACTCTCATGAAGCCATCAAGATTTGGA 285
Query 198 ACTACACATGCGATGGGAAACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGACGACGAGA 257
|||| |||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||
Sbjct 286 ACTATACATGCGATGGGAAACCGGAAGTGTTCAAGGAAAGGAAAGAGATAGACGATGAGA 345
Query 258 ATATGGCGGTAACATTCAGAGGACTAGAAGGTCACGTGATGGAGCAGCTTAAAGTGTATG 317
|||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 346 ATATGGTGATAACGTTCAGAGGACTAGAAGGTCACGTCATGGAGCAGCTTAAAGTGTATG 405
Query 318 A-CGTCATCTTTCAGTTCATTCAAAAGTC-CCCTGATGATATCATCTGTAAGATCACTAT 375
| | |||| | |||||||| |||||||| ||| ||||||||| | || |||||||| ||
Sbjct 406 ATC-TCATATATCAGTTCAGCCAAAAGTCTCCC-GATGATATCGTATGCAAGATCACAAT 463
Query 376 GATCTGGGAGAAGCAAAACGATGACAT-GCCTGAGCCTAGCAACTACATGAAGTTCGTCA 434
||| |||||||||| || |||||| | |||||||||||||||||||||||||||| |||
Sbjct 464 GATTTGGGAGAAGCGAACCGATGA-TTCGCCTGAGCCTAGCAACTACATGAAGTTCCTCA 522
Query 435 AGAGCCTCGCTGCTGACATGGATGATCACGTTCTCAAAGCCTAAATCCCCTTC 487
| ||| | | |||||||||||| || || |||||||||||||||||||| |||
Sbjct 523 AAAGCGTTGTTGCTGACATGGACGAGCATGTTCTCAAAGCCTAAATCCCTTTC 575
> AT4G23670.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr4:12332560-12333804 REVERSE
LENGTH=890
Length=890
Score = 257 bits (139), Expect = 6e-68
Identities = 337/432 (78%), Gaps = 16/432 (4%)
Strand=Plus/Plus
Query 13 AGAGAGAGAGATGGCGACGTCAGGAACATATGTGACGGAGGTTCCTTTGAAAGGATCGGC 72
||||| ||| |||||||| || ||||| || |||||||||||||| ||||||||||||||
Sbjct 139 AGAGAAAGAAATGGCGACATCGGGAACGTACGTGACGGAGGTTCCGTTGAAAGGATCGGC 198
Query 73 GGAGAAACACTACAAGCGGTGGAGGAGTGAGAACCACCTCTTCCCCGATGCCGTCGGCCA 132
|||||||||||||||| | |||| ||| |||||||| ||||| | || ||| | |||||
Sbjct 199 GGAGAAACACTACAAGAGCTGGAAGAGCGAGAACCATGTCTTCGCTGACGCCATTGGCCA 258
Query 133 CCACATCCAAGGTGTCACCATCCACGACGGCGAATGGGACTCCCATGGAGCC-ATCAAGA 191
|||||||||| |||| | ||||| |||||| ||||| || || | | |||| ||
Sbjct 259 CCACATCCAAAATGTCGTTGTTCACGAAGGCGAACATGACTCTCACGG-GTCTATCAGGA 317
Query 192 TTTGGAACTACACATGCGATGGGAA-ACCGGAGGTGTTCAAGGAGAGGAGAGAGATAGAC 250
|||| ||||||||| ||||| || | |||| ||||||| |||| ||||||||||||
Sbjct 318 GTTGGGACTACACATATGATGGAAAGAA-GGAGATGTTCAAAGAGAAGAGAGAGATAGAT 376
Query 251 GACGAGAATATGGCGGTAAC-ATTCAGAGGACTAGAAGGTCACGTGATGGAGCAGCTTAA 309
|| ||||||| | | || | |||||||| || ||||||||||||||||| || ||
Sbjct 377 GATGAGAATAAAACATTGACGAAA-AGAGGACTGGATGGTCACGTGATGGAGCATCTCAA 435
Query 310 AGTGTATGACGTCATCTTTC-AGTTCATTCA-AAAGTCCCCTGATGATA--T-CATCTGT 364
||| | ||| |||||| | | || |||| ||| || ||| |||| | | ||||
Sbjct 436 AGTATTTGATATCATCTA-CGAATTTATTCCCAAA-TC---TGAGGATAGCTGCGTCTGC 490
Query 365 AAGATCACTATGATCTGGGAGAAGCAAAACGATGACATGCCTGAGCCTAGCAACTACATG 424
|| ||||||||||| |||||||||| ||||||||| | || || || ||| |||||||
Sbjct 491 AAAATCACTATGATATGGGAGAAGCGCAACGATGACTTTCCCGAACCAAGCGGCTACATG 550
Query 425 AAGTTCGTCAAG 436
|| |||||||||
Sbjct 551 AAATTCGTCAAG 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5