BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935868

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01554.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   182    3e-45


> AT2G01554.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G70780.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:249687-250181 FORWARD LENGTH=318
Length=318

 Score =  182 bits (98),  Expect = 3e-45
 Identities = 206/253 (81%), Gaps = 27/253 (11%)
 Strand=Plus/Plus

Query  186  GAAG-GCAGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCTACTTTACTGCCCGTA  244
            |||| || |||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct  80   GAAGTGCTGGCTTCCACTTCTCGGATCAGATTCCAGCTTTTTCCGACTTTATTGCCCTTA  139

Query  245  CTATGCCTCTCAAGCATTCGATCCATGGGGTAATATCGGGTCAACCGGATCAAGGAACTT  304
            || |||||||   | |    |     |||| || ||||| ||||| ||||||||||||||
Sbjct  140  CTGTGCCTCT---G-A----A-----GGGGAAA-ATCGGTTCAACGGGATCAAGGAACTT  185

Query  305  TGTTTTGTCTAAGAAATTAGAGACTCAAAACCTTGAAGACTCTGTGATGACAACAACAGC  364
            ||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  186  TGTGTTGTCTAACAAGTTAGAGACTCAAAACCTTGAAGACTCTATGATGACAACAACAAC  245

Query  365  AATCTGGAGG--TT--G--A-A-GGC---CT-GGCTCAACAAGTCTCTCGGCCTTATGGT  412
            || | ||| |  ||  |  | | ||    || |||||||||||||| | |||||||||||
Sbjct  246  AACCCGGAAGACTTCAGGGAGATGGAAGGCTTGGCTCAACAAGTCTTTTGGCCTTATGGT  305

Query  413  TCCTTCCCATTAA  425
            |||||| ||||||
Sbjct  306  TCCTTCTCATTAA  318


 Score =  104 bits (56),  Expect = 7e-22
 Identities = 79/90 (88%), Gaps = 2/90 (2%)
 Strand=Plus/Plus

Query  21   ATGTTGTTGTACAACAAGCAAAAGAGAAACCAGAAACT-AAAGACTACAAAGAGGTTTCT  79
            |||||||   ||||||||||  |||||||||||||| |  |||||||| || ||||| ||
Sbjct  1    ATGTTGTACAACAACAAGCATCAGAGAAACCAGAAA-TCGAAGACTACCAACAGGTTCCT  59

Query  80   TGTTAGCATCAATGTCTTAGGAAGTGCTGG  109
            ||||||||||||||||||||||||||||||
Sbjct  60   TGTTAGCATCAATGTCTTAGGAAGTGCTGG  89



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21212990078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5