BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935879
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01600.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 2638 0.0
> AT2G01600.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr2:268818-272610 FORWARD LENGTH=2127
Length=2127
Score = 2638 bits (1428), Expect = 0.0
Identities = 1643/1743 (94%), Gaps = 29/1743 (2%)
Strand=Plus/Plus
Query 22 TCCGATGGGAACGCTTCAGTCATGGAGAAAAGCTTACGGAGCCCTAAAAGACTCCACCAA 81
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 154 TCCGATGGGAACGCTACAGTCATGGAGAAAAGCCTATGGAGCCCTAAAAGACTCCACCAA 213
Query 82 AGTCGGCCTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTCGCCATAGTCAAAGC 141
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 214 AGTCGGACTTGTCCGTGTCAACAGCGAATACGCCGATTTAGATGTTGCCATAGTCAAAGC 273
Query 142 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TACCAATCATGTTGAGTGTCCTCCCAAAGATCGCCATCTCAGAAAAATCTTCGCTGCAAC 333
Query 202 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCTCTTTCCCGGCGTTT 261
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 334 ATCAGTGACTCGTGCTCGAGCAGATGTTGCTTATTGTATTCACGCCCTTTCACGGCGTTT 393
Query 262 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTTATTCATCGGCTTCT 321
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 394 GCATAAAACCAGGAATTGGACGGTTGCTTTGAAAACACTAATTGTGATACATCGGCTTCT 453
Query 322 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGAAT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 454 AAGGGAAGGAGATCCAACTTTCAGAGAGGAACTATTGAATTTTTCGCAGAGAGGGCGGAT 513
Query 382 TTTGCAGCTTTCTAATTTTAAGGATGATTCAAGCCCTATTGCCTGGGATTGTTCAGCTTG 441
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 514 TTTGCAACTTTCTAATTTTAAGGATGATTCAAGTCCTATTGCTTGGGATTGTTCAGCTTG 573
Query 442 GGTACGTACTTATGCACTATTTCTCGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 501
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 574 GGTACGTACTTATGCATTGTTTCTTGAGGAACGGCTTGAATGCTTCAGGGTTTTAAAATA 633
Query 502 TGATACTGAGGCAGAACGTCTTCCCAAGTCTACCCCGGGGCAGGATAAGGGGTATAGTAG 561
|||||||||||| ||||||||||| || |||| ||| |||||||||||||||||||||||
Sbjct 634 TGATACTGAGGCCGAACGTCTTCCGAAATCTAACCCAGGGCAGGATAAGGGGTATAGTAG 693
Query 562 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AACCAGGGATTTAGATGGTGAAGAACTCTTGGAGCAGTTGCCAGCTTTGCAGCAGCTTCT 753
Query 622 CTATCGTCTCATCGGTTGCAGGCCAGAAGGTGCTGCTAACCACAATCATGTTATACAATA 681
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 754 CTATCGTCTCATCGGTTGCAGGCCGGAAGGTGCCGCTAACCACAATCATGTTATACAATA 813
Query 682 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGCACTTGCTCTGGTGTTGAAAGAGAGTTTTAAAGTCTATTGTGCTATTAATGATGGAAT 873
Query 742 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CATCAATCTCATTGACAAGTTCTTTGAAATGGCAAAACATGAAGCCATCACTTCCCTTGA 933
Query 802 GATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AATATACAAGCGTGCGGGTCAGCAGGCTCGTAGCCTTTCTGATTTCTATGAAGCCTGCAA 993
Query 862 AGGATTGGAACTTGCTAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 921
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AGGATTGGAACTTGCAAGGAATTTTCAATTTCCTGTTCTAAGAGAGCCTCCACAATCTTT 1053
Query 922 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGGGTTGTCGATGTCCCAGCAGA 981
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1054 TCTGACAACAATGGAGGAGTATATTAAAGAAGCACCGCGTGTTGTCGATGTCCCAGCGGA 1113
Query 982 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTGCCGAAGATACTGAATCGTC 1041
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1114 ACCACTGCTTCTAACATATAGGCCGGATGATGGACTGACTACCGAAGATACTGAACCGTC 1173
Query 1042 GCTTGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGT---ACCTGAAGAAACAGA 1098
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1174 GCATGAAGAACGTGAAATGTTACCTTCAGATGATGTCGTTGTTGTATCTGAAGAAACAGA 1233
Query 1099 ACCTTCTCCCCCGCTTCCTCCTTCAGCCAACGCTCAGAACTTCATTGACACCGATGATTT 1158
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1234 ACCTTCTCCCCCGCCTCCTCCTTCAGCCAACGCTCAGAACTTCATTGATACCGATGATCT 1293
Query 1159 ACTGGG-TCTGAACACTGGTGCTCCTGATGCATCAGTTATCGAAGACCAAAATGCACTTG 1217
| |||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1294 A-TGGGGTCTGAATACTGGTGCTCCTGATACATCAGTGATCGAAGACCAAAATGCACTTG 1352
Query 1218 CTTTAGCCATTATTTCAACTGATGCTAATCCTTCAACGCCTCGTTTTGGTCAAGCAAATG 1277
||||||||||| ||||||| |||||| ||||| |||| |||| |||||||||| |||||
Sbjct 1353 CTTTAGCCATTGTTTCAACAGATGCTGATCCTCCAACTCCTCATTTTGGTCAACCAAATA 1412
Query 1278 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 ATTACGATCCTACAGGATGGGAGCTTGCCTTGGTGACAGCACCTAGCAGCGATATCTCTG 1472
Query 1338 CATCCACAGAGAGGAAATTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1397
||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CATCCACTGAGAGAAAACTGGCTGGAGGGTTAGATACGCTTACACTTAGCAGTCTATACG 1532
Query 1398 ATGATGGAGCCTACATAGCTTCCCAGCGCCCTGTGTACGGTGCACCAGCTCCCAATCCAT 1457
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1533 ATGATGGAGCCTACATAGCTTCCCAACGTCCTGTCTACGGTGCACCAGCTCCCAATCCAT 1592
Query 1458 TTGCGTCCCATGACCCTTTTGCGTCGTCCAATGGTACAACTCCCCCACCTCAGCAGCCAG 1517
|||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 1593 TTGCGTCCCATGACCCGTTTGCATCGTCCAATGGCACAGCTCCCCCACCTCAGCAGCAAG 1652
Query 1518 CGGTCAACAACCCCTTCAGTGCTTACCAGCCGACATATCAGCATC--C----G------T 1565
|||| |||||||| ||| |||||||||||| |||||||||||||| | | |
Sbjct 1653 CGGTGAACAACCCATTCGGTGCTTACCAGCAGACATATCAGCATCAGCCCCAGCCAACGT 1712
Query 1566 --C--CA--A--CC--C--TCCTACCAATAATAGTAACCCATTTGGTGATTTTGGGGAAT 1613
| || | || | ||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1713 ATCAGCATCAGTCCAACCCTCCCACTAATAATAGTAATCCATTTGGTGATTTTGGGGAAT 1772
Query 1614 TCCCGGTGAACCCGGTTTCACAGCAGCCAAATACCACAGGTTATGGTGATTTCGCGGTAA 1673
||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 1773 TCCCGGTTAACCCGGTTTCACAGCAGCCAAATACCTCCGGTTATGGTGATTTCTCGGTAA 1832
Query 1674 ACCAACATAACAACCCTTTCCGCAGCACTGGCCTCCTTTGATCATGTTGTCTATTCACGT 1733
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 1833 ACCAACATAACAACCCGTTCCGTAGCACTGGCCTCATTTGATCATGTTGTCTATTCATGT 1892
Query 1734 TTG 1736
|||
Sbjct 1893 TTG 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85842931950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5