BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935881
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01610.1 | Symbols: | Plant invertase/pectin methylesterase... 998 0.0
AT1G14890.1 | Symbols: | Plant invertase/pectin methylesterase... 147 2e-34
> AT2G01610.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:273917-274820 REVERSE
LENGTH=904
Length=904
Score = 998 bits (540), Expect = 0.0
Identities = 665/721 (92%), Gaps = 26/721 (4%)
Strand=Plus/Plus
Query 2 AATTTCGGAAAATAGTGAAAATGGT-A--G---GCCAAAGTCATC-CGACGACGTTTCTA 54
||||| |||||||||||||||||| | | |||||||||| | |||||||||||||
Sbjct 10 AATTT-TGAAAATAGTGAAAATGGTAACCGTAAGCCAAAGTCA-CACGACGACGTTTCTC 67
Query 55 TTCTTCACCACCTTTCTCTTCAT-TTCCAGATCAATCTCAGCCGTCCGTTTTCCTCCACG 113
||||||||||| |||||||| || || | |||||||||||||||||||||| | ||||||
Sbjct 68 TTCTTCACCACATTTCTCTTGATATT-CGGATCAATCTCAGCCGTCCGTTTGCTTCCACG 126
Query 114 ACCAAACACTACAACAACCAACGATCTAGATTTCATCCGAACAAGCTGCAACGCTACTCT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ACCAAACACTACAACAACCAACGATCTAGATTTCATCCGAACAAGCTGCAACGCTACTCT 186
Query 174 ATATCCAGACGTCTGCTTCACGTCACTCGCCGGCTACGCCTCCGCCGTTCAAGACAGTCC 233
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 187 ATATCCAGACGTCTGCTTCACGTCACTCTCCGGCTACGCCTCTGCCGTTCAAGACAGTCC 246
Query 234 GGCGAGGCTAGCCAAGCTCGCAATCGGCGTTTCACTATCGCAAGCCAAATCCACGGCGGC 293
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 247 GGCGAGGCTAGCCAAGCTCGCAATCGGCGTTTCACTTTCACAAGCCAAATCCACTGCGGC 306
Query 294 TTATCTCTCCAAACTCTCACGCTCCGCCGCCGTAACCTCTGCGGCTAGATACTCCGGCGA 353
|| ||||||||||||||||||||| |||| | | | | ||||||||| ||
Sbjct 307 TTTTCTCTCCAAACTCTCACGCTCTGCCG-C-T-A-----------A-ATACTCCGGTGA 351
Query 354 TGGCCACCAAACTGCTTCCGCCGTAATCCGTGACTGCGTTTCGAACGTTGAAGATGCAGT 413
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 352 TGGCCACCAAACAGCTTCCGCCGTAATCCGAGACTGCGTTTCGAACGTCGAAGACGCGGT 411
Query 414 GGACGAGATGAGAGGATCTCTCCGACAACTACGCGACATGAACGGCAGAGGCGGCGTCAC 473
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 412 GGACGAGATGAGAGGATCTCTCCGTCAACTACGCGACATGAACGGCAGAGGAGGCGGCAC 471
Query 474 GGCGGCTCGGAGGTCGGTGGAAACGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGAT 533
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 GGCAGCTCGGAGGTCGGTAGAAACGTTTAGGTTCCAGATGAGTAACGTGCAGACGTGGAT 531
Query 534 GAGTGCAGCATTGACGGATGAGGACACGTGTACGGATGGATTTGAAGATATGGACGAAGG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAGTGCAGCATTGACGGATGAGGACACGTGTACGGATGGATTTGAAGATATGGACGAAGG 591
Query 594 AGGATTGATTAAGACGACCGTTTGTGATAGGCTCGAGGAAGTGAAGAGGTTAACGAGTAA 653
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 592 AGGATTGATTAAGACGACCGTTTGTGATCGGCTCGAGGAAGTGAAGAGGCTAACGAGTAA 651
Query 654 TGCTCTTGCCCTTGTCAACACTTATGCCAACAATGGAGCTCCTTGACCATGAGACCATGA 713
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 652 TGCTCTTGCCCTTGTCAACACTTACGCCAACAATGGAGCTCCATGACCATGAGACCATGA 711
Query 714 G 714
|
Sbjct 712 G 712
> AT1G14890.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:5137014-5137957 FORWARD
LENGTH=944
Length=944
Score = 147 bits (79), Expect = 2e-34
Identities = 161/200 (81%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 497 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGTGCAGCATTGACGGATGAGG 556
|||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||
Sbjct 492 CGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCGTTGACGGACGAGG 551
Query 557 ACACGTGTACGGATGGATTT--GAAG-ATATGGACGAAGGAGGATTGATTAAGACGACCG 613
| |||||||||||||| | | || | ||||| || |||| | || |||||| |
Sbjct 552 AGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAG-A--GACGAAGACGGCTA 608
Query 614 TTTGTGATAG-GCTCGAGGAAGTGAAGAGGTTAACGAGTAATGCTCTTGCCCTTGTCAAC 672
|||| ||||| | ||| || || |||||||| ||||||||||| || || || || ||
Sbjct 609 TTTGCGATAGAG-TCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCTCTCGTTAAT 667
Query 673 ACTTATGCCAACAATGGAGC 692
|| || ||||||||||||||
Sbjct 668 ACCTACGCCAACAATGGAGC 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5