BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935883
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein | c... 1254 0.0
> AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein |
chr2:278127-279296 FORWARD LENGTH=1026
Length=1026
Score = 1254 bits (679), Expect = 0.0
Identities = 824/893 (92%), Gaps = 14/893 (2%)
Strand=Plus/Plus
Query 19 TGATGAGAGAGGAGGAAGAAGAATGGCGATCAGTTCACGAGGTTTTATTAATTGTCCTTC 78
||| || ||| || |||||||||||| |||| |||||||||||||||||||| || ||||
Sbjct 92 TGAAGA-AGAAGAAGAAGAAGAATGGAGATCCGTTCACGAGGTTTTATTAATCGTTCTTC 150
Query 79 CTTATCTTCATTCCT-TGTTCGAGCTTCTCTCTATGACTCGCGTTTCTCGATCGCTCAGA 137
|||||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 151 CTTATCTTCATT-CTCTGTTCGAGCTTCTCTCTATGATTCGCGTTTCGCGATCTCTCAGA 209
Query 138 GACGCCATCAGAGACGAAACCGCCTTGTGGAC-AAACTTCGTTGTTGAACCACCGTTGAG 196
||||| ||||||||||||||||| || ||||| |||| ||||| ||||||||||||||||
Sbjct 210 GACGCGATCAGAGACGAAACCGCGTTATGGACAAAAC-TCGTTATTGAACCACCGTTGAG 268
Query 197 TTCTCGTCTGACCGATGATATTCTATCGGAGATCACTTCGAAATCTGCCGGAAAGCTCAA 256
|||||||| ||||||||||||||||||||| ||| ||| ||||| ||||||||||| ||
Sbjct 269 CTCTCGTCTAACCGATGATATTCTATCGGAGTTCAGTTCCAAATCCGCCGGAAAGCTGAA 328
Query 257 GACTCTGATTCTCCGTCAATGTCTTAGGGTCACCGACAAGGGACTCCGTCGTGTGGTGGA 316
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||
Sbjct 329 AACTCTGATTCTCCGGCAATGTCTTATGGTCACCAACAAGGGACTCCGTCGTGTTGTGGA 388
Query 317 TGCTAATCCTCTCATCACTAAGATAATTGTGCCTGGATGCTCTGTATTGACTCCTAAAGG 376
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 389 TGCTAATCCTCTCATCACTAAGATAATTGTGCCTGGATGCTCTGGATTGACTCCTGAAGG 448
Query 377 AATCATGGAATGTGTTGAAAGCTTGTCCAAGAACAACCATAAACTGGAGACACTTCACAT 436
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 449 AATCATGGAATGTGTTGAAAGCTTGTCTAAGAACAATCATAAACTAGAGACACTTCACAT 508
Query 437 CAATGGCGTCAATGGCTTTACCAAACAACATCTCTCAGTACTTTCGACTTACCTTTCTCC 496
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
Sbjct 509 CAATGGCGTCAATGGCTTTACCAAACAACATCTCTCAGCACTGTATACTTACCTTTCTTC 568
Query 497 CGAGGGAACGATCGACCTCGAGGTCTGTCCCAAATGCGATCAAGTAATGATGATTCCGCC 556
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 569 CGAGGGAACGATTGACCTCGAGGTCTGTCCCAAATGCGATGAAGTAAGGATGATTCCGTC 628
Query 557 TTGCTCAAGAGAATCATGTAAGCAAACGAATG-AACGCAAGTGCCGGGGATGCTGGCTTT 615
||||||||||||||||||||| | | ||| | ||||||||||||| |||||||||||||
Sbjct 629 TTGCTCAAGAGAATCATGTAA-C-CA-GAA-GCAACGCAAGTGCCGTGGATGCTGGCTTT 684
Query 616 GTATCCCTAGATGTGCAGAGTGCTCAGTGTGCCTTGTTGCTCCAGATACTGAGAGTCAAG 675
||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 685 GTATCCCTAGATGTGCAGAGTGCGCAGTGTGCCTTGTTGGTTCAGATACTGAGAGTCAAG 744
Query 676 AAGCAGCGTGTGGTAATGACGACGTTCTGTGTCTTGAATGTTGGCTTGTGCTTCCCAAGT 735
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 745 AAGCAGCGTGTGGTAATGATGATGTTCTGTGTCTTGAATGTTGGCTTGTGCTTCCCAAGT 804
Query 736 GCAGGTTCTGCAACAAACCCTATTGCACTATTCACAGCAGTCGTCGACATGAGATTGCAA 795
|||| |||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 805 GCAGATTCTGCAATAAACCATATTGCACTAATCACAGTAGTCGTCGACATGAGATTGCAA 864
Query 796 TCACTGATGCTGCGTCTCGGCCTTCGTTTGAATGCGAAGCTTGTTACTATAGGGCAGGTA 855
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 865 TCACTGATGCTGCATCTCGGCCTTCGTTTGAATGTGAAGCTTGTTACTATAGGGCAGGTA 924
Query 856 CAAACCCATATGAAGTCGACTATCAAATCTAAAAGAAAAACACTT-GTTGTCT 907
||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 925 CAAACCCATATGAAGTCGACTATCAAATCTAAAC-AAA--CACTTTGTTGTCT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5