BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935888
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01670.1 | Symbols: atnudt17, NUDT17 | nudix hydrolase homol... 950 0.0
AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homol... 481 4e-135
> AT2G01670.1 | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog
17 | chr2:296510-298101 REVERSE LENGTH=1211
Length=1211
Score = 950 bits (514), Expect = 0.0
Identities = 544/559 (97%), Gaps = 0/559 (0%)
Strand=Plus/Plus
Query 13 CTAAGAAAAATGGGTGTTGAGAAAATGGTGTGTTTGGCTTCTCGCACGGGTCGTCAGTTT 72
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 275 CTAAAAAAAATGGGTGTTGAGAAAATGGTGTGTTTAGCTTCTCGTACGGGTCGTCAGTTT 334
Query 73 CAGAGATACAACAAAGGTCGTCGTCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTA 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CAGAGATACAACAAAGGTCGTCGTCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTA 394
Query 133 TCTAATGATGGTAAAATCAGTGATGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGT 192
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCTAATGATGGTAAAATAAGTGATGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGC 454
Query 193 CACGCCTTGATGTTCCCTAAGGGTGGATGGGAGCTTGATGAATCTGTAGAAGAAGCAGCT 252
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 455 CACGCCTTAATGTTCCCCAAGGGTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCA 514
Query 253 TCAAGAGAATGTCTTGAAGAAGCTGGAGTTCTTGGCAACGTTGAGCACCAACTTGGAAAA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TCAAGAGAATGTCTTGAAGAAGCTGGAGTTCTTGGCAACGTTGAGCACCAACTTGGAAAA 574
Query 313 TGGGATTTTTTAAGCAAAAGCAGAGGAACATACTATGAAGGTTTAATGTTCCCTATGCTT 372
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 575 TGGGATTTTTTAAGCAAAAGCAGAGGAACATACTATGAAGGACTAATGTTCCCTATGCTT 634
Query 373 GTTACAGAACAACTTGAGCTTTGGCCTGAACAACATGTTAGGCAAAGAATTTGGATGAAT 432
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 635 GTTACAGAACAACTTGAGCTTTGGCCTGAACAACATGTTAGGCAAAGAATCTGGATGAAT 694
Query 433 GTAACCGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GTAACCGAAGCAAGAGAAGCTTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTG 754
Query 493 GTTGAGAGACTTTCATCACCAATGAATCAACCAAAGGAAGAGAAGACTATTTCAATATCT 552
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 755 GTTGAGAGACTTTCATCACCAATGAATCAACCAAAGGAAGAGAAGACTATGTCAATCTCT 814
Query 553 ATTGAAACAATGTGTTGAT 571
|||||||||||||||||||
Sbjct 815 ATTGAAACAATGTGTTGAT 833
> AT1G14860.1 | Symbols: atnudt18, NUDT18 | nudix hydrolase homolog
18 | chr1:5124742-5126151 FORWARD LENGTH=1128
Length=1128
Score = 481 bits (260), Expect = 4e-135
Identities = 396/462 (86%), Gaps = 8/462 (2%)
Strand=Plus/Plus
Query 37 ATGGTGTGTTTGGCT-TCTCGCACGGGTCGTCAGTTTCAGAGATACAACAAAGGTCGTCG 95
||||||||||||| | || || ||||||||||| | || ||||||||||| || || ||
Sbjct 252 ATGGTGTGTTTGG-TCTCCCGTACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCG 310
Query 96 TCAAGTCGTTGGATGTGTTCCTTACAGATTCAAGCTATCTAATGATGGTAAAATCAGTGA 155
||||||||| || ||| |||| |||||| ||||| | || | |||||| | ||| || ||
Sbjct 311 TCAAGTCGTCGGGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGA 370
Query 156 TGAAGTAGAAGTTCTTGTTATCTCTTCCCAAAAAGGTCACGCCT-TGATGTTCCCTAAGG 214
||| | || ||||||||||| || || ||||| ||||||| || |||||||||| ||||
Sbjct 371 CGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACG-CTCTGATGTTCCCAAAGG 429
Query 215 GTGGATGGGAGCTTGATGAATCTGTAGAAGAAGCAGCTTCAAGAGAATGTCTTGAAGAAG 274
|||| ||||||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct 430 GTGGTTGGGAGCTTGATGAATCTGTAGAAGAAGCTGCGTCAAGAGAATCTCTAGAAGAAG 489
Query 275 CTGGAGTTCTTGGCAACGTTGAGC-ACCAACTTGGAAAATGGGATTTTTTAAGCAAAAGC 333
|||||||| |||| ||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 490 CTGGAGTTGTTGGAAACGTTGAGAGAC-AACTTGGAAAATGGGATTTCTTAAGCAAAAGC 548
Query 334 AGAGGAACATACTATGAAGGTTTAATGTTCCCTATGCTTGTTACAGAACAACTTGAGCTT 393
| |||||||| ||||||||| || |||||||| |||||||| | |||| | |||||||||
Sbjct 549 AAAGGAACATTCTATGAAGGATTCATGTTCCCAATGCTTGTGAAAGAAGAGCTTGAGCTT 608
Query 394 TGGCCTGAACAACATGTTAGGCAAAGAATTTGGATGAATGTA-ACCGAAGCAAGAGAAGC 452
||||||||||||||| || | ||||||||||||||||| || | ||||||||||| ||
Sbjct 609 TGGCCTGAACAACATCTTCGTCAAAGAATTTGGATGAAAGTTGAT-GAAGCAAGAGACGC 667
Query 453 TTGTAGAGATTGGTGGATGAAAGAAGCATTAGATGTTTTGGT 494
||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 668 TTGTAGAGATTGGTGGATGAAGGAAGCGTTAGATGTTTTGGT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5