BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935898

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA ty...   296    9e-80
  ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA ty...   296    9e-80


> ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA 
type, core | chrC:145291-152175 REVERSE LENGTH=6885
Length=6885

 Score =  296 bits (160),  Expect = 9e-80
 Identities = 160/160 (100%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  34    TCTGAGATCCACATCTATGAATTGAAAGGTCCGAACGATCAACTCTGCAATCAGTTGTTA  93
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2734  TCTGAGATCCACATCTATGAATTGAAAGGTCCGAACGATCAACTCTGCAATCAGTTGTTA  2793

Query  94    GAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAGTTGAAACCCTTTTTATTGGATGAT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2794  GAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAGTTGAAACCCTTTTTATTGGATGAT  2853

Query  154   CATAATACTTCTCAAAAATCGAAATTCTTGATCAATGGAG  193
             ||||||||||||||||||||||||||||||||||||||||
Sbjct  2854  CATAATACTTCTCAAAAATCGAAATTCTTGATCAATGGAG  2893


> ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA 
type, core | chrC:86474-93358 FORWARD LENGTH=6885
Length=6885

 Score =  296 bits (160),  Expect = 9e-80
 Identities = 160/160 (100%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  34    TCTGAGATCCACATCTATGAATTGAAAGGTCCGAACGATCAACTCTGCAATCAGTTGTTA  93
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2734  TCTGAGATCCACATCTATGAATTGAAAGGTCCGAACGATCAACTCTGCAATCAGTTGTTA  2793

Query  94    GAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAGTTGAAACCCTTTTTATTGGATGAT  153
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2794  GAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAGTTGAAACCCTTTTTATTGGATGAT  2853

Query  154   CATAATACTTCTCAAAAATCGAAATTCTTGATCAATGGAG  193
             ||||||||||||||||||||||||||||||||||||||||
Sbjct  2854  CATAATACTTCTCAAAAATCGAAATTCTTGATCAATGGAG  2893



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5