BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935902
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01760.1 | Symbols: ARR14, RR14 | response regulator 14 | ch... 1773 0.0
> AT2G01760.1 | Symbols: ARR14, RR14 | response regulator 14 |
chr2:332967-334696 FORWARD LENGTH=1405
Length=1405
Score = 1773 bits (960), Expect = 0.0
Identities = 1130/1209 (93%), Gaps = 24/1209 (2%)
Strand=Plus/Plus
Query 1 CAATATTCACACGAAAGC-TAATGGCGATCAACGATCAGTTTCCTAGTGGGTTAAGAATT 59
||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 54 CAATACTCACACCAAAGCTTAATGCCGATCAACGATCAGTTTCCTAGTGGGTTAAGAATA 113
Query 60 CTCCTTGTAGACGATGATACTTCATGCTTGTTCATTCTCGAGAAGATGCTTCTCCGTCTC 119
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 114 CTCGTTGTAGACGATGATACTTCATGCTTGTTCATTCTCGAGAAAATGCTTCTCCGTCTC 173
Query 120 ATGTACCAAGTTACAATTTGCTCACAAGCTGATGTTGCGTTAACCATTCTAAGAGAAAGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ATGTACCAAGTTACAATTTGCTCACAAGCTGATGTTGCGTTAACCATTCTAAGAGAAAGA 233
Query 180 AAAGACTGTTTTGATTTGGTTCTAAGTGATGTTCATATGCCTGGCATGAATGGTTACAAA 239
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 234 AAAGACAGTTTTGATTTGGTGCTAAGTGATGTTCATATGCCTGGTATGAATGGTTACAAT 293
Query 240 CTTCTTCAACAAGTTGGTCTTCTTGAATTGGATCTTCCTGTCATTATGATGTCTGTTGAT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 294 CTTCTTCAACAAGTTGGTCTTCTTGAAATGGATCTTCCTGTCATTATGATGTCTGTTGAT 353
Query 300 GGAAGAACAACTACAGTCATGACTGGAATCAACCATGGAGCTTGTGATTATCTTATTAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 354 GGAAGAACAACTACAGTCATGACTGGAATCAACCATGGAGCTTGTGATTATCTAATCAAA 413
Query 360 CCTATTCGTCCTGAAGAGCTTAAGAACATTTGGCAACGTGTTGTTCGAAGGAAATGTGTA 419
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 414 CCTATTCGTCCTGAAGAGCTTAAGAACATTTGGCAACATGTTGTTAGAAGGAAATGTGTG 473
Query 420 ATGAAGAAAGAGCTTCGAAATTCTCAAGCTTTGGAGGATAACAAGAACAGTGGTAGTCTA 479
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 474 ATGAAGAAAGAGCTTCGAAGTTCTCAAGCTTTAGAGGATAACAAGAACAGTGGTAGCCTC 533
Query 480 GAGACGGTT-TT-TT-CGGCTAGTGAATGCTCAGAGGGAAGTTTGATGAAACGTAGgaag 536
||||| ||| || || ||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 534 GAGACTGTTGTTGTTTCGGTTAGTGAATGCTCAGAGGAAAGTTTGATGAAATGTAGGAAT 593
Query 537 aagaagaagaagaaga-G-GA-GTGTTGATAGAGAAGATAATGAGGATGATCTTGATCTT 593
|||||||||||||||| | || ||||||||||||| |||||||| ||||||||| |||
Sbjct 594 AAGAAGAAGAAGAAGAAGAGAAGTGTTGATAGAGATGATAATGAAGATGATCTT---CTT 650
Query 594 CTTAATCCTGGAAACTCGAAGAAGTCACGCGTTGTTTGGTCTATTGAATTGCATCAACAA 653
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTGATCCTGGAAACTCGAAGAAGTCACGCGTTGTTTGGTCTATTGAATTGCATCAACAA 710
Query 654 TTCGTTAATGCCGTTAACAAACTTGGAATTGATAAAGCTGTACCAAAGCGGATTCTCGAG 713
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 711 TTCGTTAATGCCGTAAACAAACTTGGAATTGACAAAGCTGTACCAAAGCGGATTCTCGAG 770
Query 714 TTGATGAATGTTCCTGGTTTAAGCAGAGAAAACGTGGCTAGTCATTTGCAGAAATTCCGA 773
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 771 TTGATGAATGTTCCTGGTTTAAGCAGAGAAAACGTGGCTAGTCATTTACAGAAGTTCCGA 830
Query 774 ATGTATTTGAAGCGATTAAGCGGTGAAACTTCTCAGAATAATGACACGGAGTCTATCAAA 833
||||||||||| |||||||||||||| |||| |||| ||||||| | ||||||| ||||
Sbjct 831 TTGTATTTGAAGAGATTAAGCGGTGAAGCTTCGCAGAGTAATGACTCTGAGTCTACCAAA 890
Query 834 AGATATGAAAACATTCAAGCTCTGGTTTCCTCAGGACAATTACATCCACAGACATTAGCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGATATGAAAACATTCAAGCTCTGGTTTCCTCAGGACAATTACATCCACAGACATTAGCT 950
Query 894 GCATTGTATGGTCAACCAATAGACAATCATCACTCTGCTAGTTTTGGAGTTTGGATTCCT 953
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GCATTGTTTGGTCAACCAATAGACAATCATCACTCTGCTAGTTTTGGAGTTTGGATTCCT 1010
Query 954 AATGATGATCATCTTGGTAGATCTCAAAATGAACACTTTTCGGTTGATGTATCATCCGCT 1013
||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1011 AATGAC-A--ATCTTGGTAGATCTCAAAATGAACACTTCTCGGTTGATGTATCATCCGCT 1067
Query 1014 TCTAACCGTCCTGTTTCTGTGGCGGTTCATGGTCTATCTTCCTCAGCAAATTACAGACTG 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1068 TCTAACCGTCCTGTTTCTGTGGCGGTTCATGGTCTATCTTCCTCAGCAAATTTCAGACAG 1127
Query 1074 AGAGGTGATGTTAACAACAACACAGACCACAGAATCAAACAAGGGTATGGATCAATTGTT 1133
|||||||| ||||||||||||| || | ||| ||||||||||||||||| |||
Sbjct 1128 AGAGGTGACGTTAACAACAACA--GA--A-----TCAGACAAGGGTATGGATCAAATGTC 1178
Query 1134 AATGAAGAATCTTGGATCTTGGAAAGATCTTCAAGACAACGATATTGAACA-TCATGAAT 1192
||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||| ||
Sbjct 1179 AATGAAGAATCTTGGATCTTGGAAAGATCTTCAAGACAAAGATAGTGACCAAT-ATGGAT 1237
Query 1193 TGGCTTAAG 1201
|||||||
Sbjct 1238 ACGCTTAAG 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5