BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935904
Length=439
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01780.1 | Symbols: | Curculin-like (mannose-binding) lecti... 283 9e-76
> AT2G01780.1 | Symbols: | Curculin-like (mannose-binding) lectin
family protein | chr2:338024-339871 REVERSE LENGTH=828
Length=828
Score = 283 bits (153), Expect = 9e-76
Identities = 220/251 (88%), Gaps = 10/251 (4%)
Strand=Plus/Plus
Query 164 TTTTCCAACAACAA-CTTCGTCCTCG-TCGATCAAGCTGGAACCCGTGTTTGGGGGACGA 221
||||||||||| || ||| ||||| | | ||||||||||| | |||||||||||| || |
Sbjct 190 TTTTCCAACAATAATCTT-GTCCTTGAT-GATCAAGCTGGTATCCGTGTTTGGGGCACAA 247
Query 222 AGTTTCCGGGAGTTATTAGCTCAAT-GTTGGTTGTAGAGCTTCTTAATGATGGAAACTTC 280
| ||| ||||||| || |||| || ||||||| |||| ||||| |||||||||||||
Sbjct 248 ATTTTATGGGAGTTGTTGGCTC-ATCGTTGGTTAAAGAGTTTCTTGATGATGGAAACTTT 306
Query 281 ATTATCAAGAACACATGGGACAACGACACAGATGGTTTTTTATGGCAAAGCTTTGATTTC 340
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 307 GTTATCAAGAACACATGGGACAACGACACAGCTGGTTTCTTATGGCAAAGCTTTGATTTC 366
Query 341 CCT-ACTGATACTTTACTGCGAGGTATGGCATTGGGTTGGAATTTTCACAAGGGGA-TCA 398
| | |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct 367 C-TGACTGATACTTTACTGCCAGGTATGGCATTGGGTTGGAAATTTCACA-GGGGAATCA 424
Query 399 ATCGATACTTG 409
|||||||||||
Sbjct 425 ATCGATACTTG 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20861115835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5