BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935920
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01920.1 | Symbols: | ENTH/VHS/GAT family protein | chr2:42... 1264 0.0
> AT2G01920.1 | Symbols: | ENTH/VHS/GAT family protein | chr2:426052-426990
FORWARD LENGTH=939
Length=939
Score = 1264 bits (684), Expect = 0.0
Identities = 859/943 (91%), Gaps = 14/943 (1%)
Strand=Plus/Plus
Query 15 CGAAAAATGAAGTTATGGAGACGCACCGCCGGAGCTATAAAGGACAAACTCAGTCTAATC 74
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 7 CGAAAAATGAAGTTGTGGAGACGCGTCTCCGGAGCTATAAAGGACAAACTCAGTCTCATC 66
Query 75 ACGGCGGCTGATGAAAAATTCACGGCGGCGATTATCAAAGCGACGAGTCACAACGATCTC 134
|| ||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 67 ACCGCGACGGATGAAAAATTCACGGCGGCGGTTATCAAAGCGACGAGTCATAACGATGTC 126
Query 135 TCAATGAACATCGAAAACGTTCAATTCATCTATAGATATTTACAGAGCAACCCTTCTAGT 194
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 127 TCAATGGACATCGAAAACGTTCAATTCATCTATAGATACATACAGAGCAACCCTTCCAGT 186
Query 195 TTCAAACCAATCATACGCGCCGTCTCGTTACGCGTGGAACGCACGCGTAATTGGACGGTG 254
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 187 TTCAAACCAATTATACGCGCCGTCTCGTTACGCGTGGAACACACGCGTAACTGGACGGTG 246
Query 255 GCTTTGAAATGTTTGATGTTATTACACGGCTTGTTCTTTTCCGGAATCATGGCAGTTGAT 314
||||||||||||||||||||||| |||||||||||||| |||||||||||| | || |||
Sbjct 247 GCTTTGAAATGTTTGATGTTATTGCACGGCTTGTTCTTCTCCGGAATCATGACCGTCGAT 306
Query 315 TCTATCGGACGGTTACCGTTCGATCTTTCCGATTTCGGGAAAAGGAAATCTCGGTTTAGT 374
|| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 307 TCGATCGGACGGTTACCGTTCGATCTTTCGGGTTTCGGGAGAAGGAAATCTCGGTTTAGT 366
Query 375 AGAACCGGTCGGTTTAACATTTTCGTTCGCGCTTATTTTTCA--TTTCTTGACGAAAGAT 432
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 367 AGAACCGGTCGGTTTAACATCTTCGTTCGCGCTTA--TTTCATGTTTCTTGACGAAAGAT 424
Query 433 CGATTCTCTTTTACAATAAGAACATGATTCGAATT-GAGATCATCGTTAAAATGCAACGA 491
||||||||| ||| || |||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct 425 CGATTCTCTATTATAACAAGAACATGATTCG-ATTAGAGATTATCGTTAAGATGCAACGA 483
Query 492 ATCGTTGATTCATTGATGAGAATCAAGCCGATTGGTGAAACGCCTCTTGTAATCGAAGCT 551
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 484 ATAGTTGATTCATTGATGAGAATCAAACCAATTGGTGAAACACCTCTTGTAATCGAAGCT 543
Query 552 ATGGAATATGTAATCAGCGAGGTTGTTGTGATTAACGGTCATATCTGCCGCGGATTCGCC 611
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 544 ATGGAATATGTAATCAGCGAGGTTGTTTTGATTAACGGTCATATATGCCGCGGATTCGCG 603
Query 612 AGTTTCTTATCCAATGTTCAGTCGAATATGCTGGAGATATCGTCAGCAGAGGCGGAATTA 671
||||||||||| |||| |||||||||||||| ||||||||||| || |||||||| ||
Sbjct 604 GGTTTCTTATCCGATGTACAGTCGAATATGCTCGAGATATCGTCCGCGGAGGCGGATTTG 663
Query 672 GCGATGAAGATCGTGGCGAAATCTTTGTCGCAGAGAGAACAACTCTTCAAGTATTTCGAA 731
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 GCGATGAATATCGTGGCGAAATCTTTGTCGCAGAGAGAAAAACTCTTCAAGTATTTCGAA 723
Query 732 TTCTGTAGAGATTTTGGTGTCACCAACGCTCATGAAATCTCTAATTTCGTACGAATCACG 791
|||||||||| ||||||||||||||||||||| |||| ||||||| || | |||||||||
Sbjct 724 TTCTGTAGAGGTTTTGGTGTCACCAACGCTCAAGAAACCTCTAATATCTTGCGAATCACG 783
Query 792 GAATCTCAAGTGATAGTGCTCGACAAGCTTCTCCATATCGCCCCCGAATTAGATCGGAAG 851
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 784 GAATCTCAAATGATAGTTCTCGACAAGCTTCTCCATATCGCCCCCGAGTTAGATTGGAAA 843
Query 852 GCCGCAAAAGTAACACCGGTAACCGCGGCAGATATGGCGGAGGTGGATTTGGTTACCA-C 910
|||||||||||||| |||||||||||||| ||||||| |||||||||| |||| |
Sbjct 844 GCCGCAAAAGTAACGCCGGTAACCGCGGCGGATATGG------TGGATTTGGTGACCAGC 897
Query 911 TGAGGAGTGTTCTAATAGTCCATCAGATTTAATTAGCTTCTAA 953
|||||| | ||||||| |||||||||||| ||| |||||||
Sbjct 898 -GAGGAGCGCTCTAATACTCCATCAGATTTTCTTACCTTCTAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5