BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935944
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain ... 3003 0.0
AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain ... 627 1e-178
AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 503 3e-141
AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domai... 289 8e-77
> AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain
5 | chr2:505487-509425 FORWARD LENGTH=2116
Length=2116
Score = 3003 bits (1626), Expect = 0.0
Identities = 1783/1856 (96%), Gaps = 22/1856 (1%)
Strand=Plus/Plus
Query 1 CATAGAACACAGAAGAATCCATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 CATAGAACACAGAAGAATCCATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAG 76
Query 61 TCCGACAAGATGATCAATctcacctcctccctcctaattcctccgccgctgctcctcctc 120
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 77 TCCGACAAGATGACCAATCTCACCTCCTCCCACCTAATTCCTCCGCCGCTGCTCCTCCTC 136
Query 121 ctccacctcctcACCACCAGACACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGA 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 137 CTCCACCTCCTCACCACCAGGCACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGA 196
Query 181 AGAGAAACCAACCAAGAACTCCAAATTCCGATGCAGAAGTGATAGCTTTATCTCCAAAGA 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 197 AGAGAAACCAACCAAGAACTCCAAATTCCGATGCGGAAGTGATAGCTTTATCTCCAAAGA 256
Query 241 CACTAATGGCTACAAACAGATTCATTTGTGAAGTATGCAACAAAGGGTTTCAAAGAGAAC 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 257 CACTAATGGCTACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAAC 316
Query 301 AAAATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTGAAACAGAAATCGA 360
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 317 AGAATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAACAGAAATCGA 376
Query 361 CCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC 436
Query 421 CCTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTG 496
Query 481 AAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 497 AAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCGGATTGGAAAG 556
Query 541 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTC 616
Query 601 GGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGACGCGTTGGCTCAAGAGAGTGCGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGACGCGTTGGCTCAAGAGAGTGCGA 676
Query 661 GACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACCA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 GACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACAA 736
Query 721 ACAACTCCAACAACAACACTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCAC 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ACAACTCCAACAACAACGCTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCAC 796
Query 781 AGAATCATGATCACCAGTCCGGTGACGTTCTCCGTCTTGGAAGCGGAGGAGGAGGAG--- 837
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGAATCTTGATCACCAGCCCGGTGACGTTCTCCGTCTTGGAAGCGGAGGAGGAGGAGGAG 856
Query 838 ---CCGCTTCACGGTCTGCCTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGC 894
|||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GAGCCGCTTCACGCTCTTCTTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGC 916
Query 895 AAGAGCAAAACCCTAGCTTTCATGATCAACAAGACcatcatcatcatcatcaACAAGGGT 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 917 AAGAGCAAAACCCTAGCTTTCATGATCAACAAGATCATCATCATCATCATCAACAAGGGT 976
Query 955 TTTTGGCTGCGAACAATAACATCAAGCCATCACCGATGAGTTTTCAACAGAATCTGATGC 1014
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 977 TTTTGGCTGGGAACAATAACATCAAGCAATCACCAATGAGTTTTCAACAGAATCTGATGC 1036
Query 1015 AGTTCTCACATGATAACCATAACTCTGCTTCCTCCAATCTCTTCAATCTCAGCTTCCTCT 1074
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 1037 AGTTCTCACATGATAACCATAATTCTGCTCCCTCCAATGTCTTCAATCTCAGCTTCCTCT 1096
Query 1075 CTGGAAACAACGGAGTTACTTCTGCGACAAGCAACCCTAATGCTGCCAATGCTGCCGCTG 1134
| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||
Sbjct 1097 CCGGAAACAACGGAGTTACTTCTGCCACAAGTAACCCTAATGCTGCCGCCGCTGCTGCTG 1156
Query 1135 TTTCTTCGGGTAATCTTATGATTTCAAACCATTTTGATGGTGAAAATGCTGTTggaggag 1194
||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 1157 TTTCTTCTGGTAATCTTATGATATCAAACCATTATGATGGCGAAAATGCTGTTGGAGGAG 1216
Query 1195 gaggaggaggagAAGGAAGCACTGGTCTCTTCCCTAACAATCTGATGAGCTCGGCCGATA 1254
|||||| | || | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1217 GAGGAG-A--AG--G-AAGCACTGGTCTCTTCCCTAACAATCTGATGAGCTCGGCAGATA 1270
Query 1255 GAATCAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAATCCAAATTCAG 1314
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1271 GAATTAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAGTCCAAATTCAG 1330
Query 1315 CACCTCACATGTCAGCCACTGCCCTTCTTCAGAAAGCTGCTCAAATGGGTTcaacctcaa 1374
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1331 CACCTCACATGTCAGCCACTGCCCTTCTACAGAAAGCTGCTCAAATGGGTTCAACCTCAA 1390
Query 1375 gcaacaacaacaacggaagcaacaataacaacaataacaaTGCCTCATCGATCCTAAGAA 1434
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1391 GCAACAACAACAACGGAAGCAACACCAACAACAATAACAATGCCTCATCGATCCTAAGAA 1450
Query 1435 GCTTTGGGAGTGGAATCTACGGAGAAAACGAGAGTAATCTTCAGGATTTGATGAATTCTT 1494
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1451 GCTTTGGGAGTGGAATCTACGGAGAAAATGAGAGTAATCTTCAGGATTTGATGAATTCTT 1510
Query 1495 TCTCTAACCCCGGCGCAACGGGAAACGTTAACGGAGTAGATTCTCCTTTTGGTTCGTATG 1554
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1511 TCTCTAACCCCGGCGCAACGGGAAACGTTAACGGAGTTGATTCTCCTTTTGGTTCGTACG 1570
Query 1555 GAGGAGTGAACAAAGGATTAAGCGCGGATAAGCAGAGCATGACTAGAGACTTTCTTGGAG 1614
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1571 GAGGAGTGAACAAAGGATTAAGCGCTGACAAACAGAGCATGACTAGAGACTTTCTTGGAG 1630
Query 1615 TTGGACAGATCGTAAGAAGCATGAGTGGAAGCGGAGGGTTTcaacaacagcaacagcagc 1674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1631 TTGGACAGATCGTAAAAAGCATGAGTGGAAGCGGAGGGTTTCAACAACAGCAACAACAGC 1690
Query 1675 aacagca--a-caacaacaaca------TGGAAATAGTAGAGAAAGAGTTGGCTCGTCGT 1725
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1691 AACAGCAGCAACAACAACAACAACAACATGGAAATAGTAGAGAAAGAGTTGGCTCGTCGT 1750
Query 1726 CGGATTCCGCCGATAGAAGCAGCATGAATGTGAATACCGGTGGTGGTCCGGCAAATACTT 1785
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1751 CGGATTCCGCTGATAGAAGCAGCATGAATGTGAATACCGGAGGTGGTCCGGCAAGTACTT 1810
Query 1786 CACCACCTTATGGAATCCATCATGCGAGTTTCTAAGAAGATAAAA-AAGTTTCTAA 1840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1811 CACCACCTTATGGAATCCATCATGCGAGTTTCTAAGAAGATAAAAGAAGTTTCTAA 1866
> AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain
4 | chr2:518159-521707 REVERSE LENGTH=1844
Length=1844
Score = 627 bits (339), Expect = 1e-178
Identities = 457/513 (89%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 161 AGCTCCACCGCAGAA-AAA-GAAGAGAAACCAACCAAG-AACTCCAAATTCC-GATGCAG 216
||||||||| | || ||| | | ||||||||||| | ||| ||||| ||| ||||| |
Sbjct 271 AGCTCCACCACCCAAGAAACG-A-AGAAACCAACCCGGAAAC-CCAAA-TCCTGATGCGG 326
Query 217 AAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATTTGTGAAGTAT 276
||||| |||| |||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 327 AAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTAT 386
Query 277 GCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTTCACCGAAGAGGACACAATCTTC 336
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 387 GTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCC 446
Query 337 CATGGAAGCTGAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGG 396
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 447 CATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGG 506
Query 397 AGCCCTCGTGCGTCCACCATGACCCCTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 456
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 507 AGCCAACGTGCGTTCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 566
Query 457 AACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTT 516
| ||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||
Sbjct 567 AGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCGTT 626
Query 517 ACGCTGTTCAATCAGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTT 576
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 627 ACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGAT 686
Query 577 GTGACTGTGGTAC-ACTCTTCTCTCGGCGAGACAGTTTCATCACACATAGAGCTTTCTGT 635
||||||||||||| | |||||||| | || || |||| |||||| ||||| ||||||||
Sbjct 687 GTGACTGTGGTACCA-TCTTCTCTAGACGTGATAGTTACATCACGCATAGGGCTTTCTGC 745
Query 636 GACGCGTTGGCT-CAAGAGAGTGCGAGACACCC 667
|| || ||| | ||||||| ||| ||| ||||
Sbjct 746 GATGCATTGA-TACAAGAGACTGCAAGAAACCC 777
> AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:4989563-4992732
FORWARD LENGTH=1950
Length=1950
Score = 503 bits (272), Expect = 3e-141
Identities = 398/458 (87%), Gaps = 12/458 (3%)
Strand=Plus/Plus
Query 186 AACCAACCAAG-AACTCCAAATTCC-GATGCAGAAGTGATAGCTTTATCTCCAAAGAC-A 242
|||||||| | ||| ||||| ||| ||||| ||||||||||| ||||| |||||||| |
Sbjct 425 AACCAACCCGGAAAC-CCAAA-TCCAGATGCTGAAGTGATAGCGTTATCGCCAAAGACGA 482
Query 243 CTAATGGCTACAAACAGATTCATTTGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAA 302
||||||| || ||||| ||| | |||||||| |||||||||||||| || || |||||
Sbjct 483 -TAATGGCGACGAACAGGTTCCTATGTGAAGTGTGCAACAAAGGGTTCCAGAGGGAACAG 541
Query 303 AATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTGAAACAGAAA-TCGAC 361
||||| || || ||| | || |||||||| |||||||||||||||||||| ||| || |
Sbjct 542 AATCTGCAGCTCCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACA-AAAGTCCAA 600
Query 362 CAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCC 421
|||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 CAAAGAGGTGAGGAGGAAGGTGTACCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCC 660
Query 422 CTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGA 481
| |||||||||||||||||||||||||||||||||| ||||| || || || ||||||||
Sbjct 661 CGCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGA 720
Query 482 -AAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAG 540
||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 721 GAAA-AAGTGGAAGTGCGATAAGTGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAG 779
Query 541 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTAC-ACTCTTCTCT 599
||||||| ||||| |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 780 CTCACTCTAAGACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTACCA-TCTTCTCT 838
Query 600 CGGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGA 637
|| ||||||||| |||||| || || || ||||||||
Sbjct 839 AGGAGAGACAGTTACATCACCCACAGGGCATTCTGTGA 876
> AT4G02670.1 | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain
12 | chr4:1176190-1178489 REVERSE LENGTH=1209
Length=1209
Score = 289 bits (156), Expect = 8e-77
Identities = 378/479 (79%), Gaps = 40/479 (8%)
Strand=Plus/Plus
Query 207 TCC-GATGCAGAAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCAT 265
||| |||||||||||||| || ||||| ||||||||||| | || |||||||||||| |
Sbjct 189 TCCAGATGCAGAAGTGATCGCATTATCACCAAAGACACTTCTTGCAACAAACAGATTCGT 248
Query 266 TTGTGAAG-TATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTTCACCGAAGAG 324
||||| || ||||||||||||||||||||||||| || |||||||| |||||| | ||||
Sbjct 249 TTGTG-AGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCACAGGAGAG 307
Query 325 GACACAATCTTCCATGGAAGCTGAAACAGAA-ATCGACCAAAGAAGTG-AAGAGAA-AA- 380
| ||||||||||||||||||||||||||||| | | ||||||||| || |||| ||
Sbjct 308 GCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-ACCAAAGAACAACAAAAGAAGAAA 366
Query 381 GTGTATCTT-TGTCCGGAGCC---CTCGTGCGTC--CACCATGACCC-CTCACGTGCTCT 433
|| || | | || || ||| | || |||| || |||||| || || | | |||||
Sbjct 367 GTCTA-CGTGTGCCCAGAGACAAACT-GTGC-TCATCACCAT--CCATCT-A-GAGCTCT 419
Query 434 CGGAGACCTCACCGGAATCAAGAAACA-TTATTACCGTAAACACGGTGAAAAGAAGTGGA 492
|| || ||||| || ||||||||||| || || | | ||||| || || ||||| ||||
Sbjct 420 TGGGGATCTCACAGGGATCAAGAAACACTT-TTGCAGGAAACATGGAGAGAAGAAATGGA 478
Query 493 AATGCGATAAA-TGCTCTAAGCGT-TACGCTGTTCAATCAGATTGGAAAGCTCACT-CCA 549
|||| || ||| || || ||| | || ||||||||||| |||||||||||||| | |||
Sbjct 479 AATGTGA-AAAGTGTTCAAAGT-TCTATGCTGTTCAATCTGATTGGAAAGCTCA-TACCA 535
Query 550 AGA-CTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCG-GCGA-- 605
||| || ||||||| | ||| ||| | |||||||| || ||||||| ||||| | ||
Sbjct 536 AGATCT-GTGGTACTAGAGATTATAGATGTGACTGCGG--CACTCTTTTCTCGAG-GAAA 591
Query 606 GACAGTTTCATCACACATAGAGC-TTTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGAC 663
|||| |||||| || |||||||| ||| ||||| || || || |||| ||||| ||||
Sbjct 592 GACACTTTCATAACGCATAGAGCGTTT-TGTGATGCATTAGCAGAAGAAAGTGCAAGAC 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91063788630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5