BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935945
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain ... 2752 0.0
AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain ... 638 0.0
AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 573 2e-162
> AT2G02080.1 | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain
4 | chr2:518159-521707 REVERSE LENGTH=1844
Length=1844
Score = 2752 bits (1490), Expect = 0.0
Identities = 1625/1691 (96%), Gaps = 5/1691 (0%)
Strand=Plus/Plus
Query 1 TATGGCTTATTTTTaaaagaagaagaacacaaaacagtagagagagagaaagagatatac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 7 TATGGCTTATTTTTAAAAGAAGAAGAACACAAAACAGT--AGAGAGAGAAAGAGATATAG 64
Query 61 agatagagagagataGGGCTTTGAGATTATTCTCTTCCACGCAAAGAAGAAGATCTAAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 AGATAGAGAGAGATAGGGCTTTGAGATTATTCTCTTCCACGCAAAGAAGAAGATCTAAAG 124
Query 121 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCCCTGCTCAGCCT 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 125 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCT 184
Query 181 TTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTAACCGGAAAGATACTTTTATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTAACCGGAAAGATACTTTTATG 244
Query 241 TCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCC 304
Query 301 GGAAACCCAAATCCTGATGCAGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACA 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 305 GGAAACCCAAATCCTGATGCGGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACA 364
Query 361 AACAGATTCATATGTGATGTATGCAACAAAGGATTTCAAAGAGAACAAAATCTACAGCTT 420
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 365 AACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTT 424
Query 421 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAGAAGTCAACCAAAGAAGTGAAG 480
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 425 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAG 484
Query 481 AGGAAAGTATATCTTTGTCCGGAGCCGACGTGCGTTCACCATGACCCGTCACGTGCTCTC 540
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 485 AGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACCATGACCCGTCACGTGCTCTC 544
Query 541 GGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 GGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAA 604
Query 601 TGCGAGAAATGTTCTAAGCGTTACGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACT 660
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 605 TGTGAGAAATGTTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACT 664
Query 661 TGTGGTACTAAAGAATATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC 724
Query 721 ATCACACATAGAGCTTTCTGCGATGCATTGATACAAGAGAGTGCAAGAAACCCTACCGTG 780
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 725 ATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTG 784
Query 781 AGCTTTACGTCAATGGCAGCTGCTAGTAGCGGTGTCGGCTCTGGGGGAATCTACGGGAGA 840
||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 785 AGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCTCCGGCGGAATCTACGGGAGA 844
Query 841 CTTGGCGGTGGCAGCGCTCTCTCACACCACCATTTAAGTGACCATCCGAGTTCTGGATTT 900
|||||||||||||| |||||||||||||||||||| ||||||||||| | || |||||||
Sbjct 845 CTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTT 904
Query 901 TCCCCTCTCGCGGGTTACAATCTGAACATTGCAACTTCTGAAAATAGGAGAGACTTTCTT 960
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 905 AACCCTCTCGTGGGTTACAATCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATT 964
Query 961 CCGCAATCGTCAAACCCTAACTTCCTAATCCAATGCGCTTCGAGCCAAGGAATGTTGACT 1020
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 965 CCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAAT 1024
Query 1021 ACAACGCCAAACAACAATGATCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGAT 1080
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGAT 1084
Query 1081 CCAGTGGACAACATCAACCTCAAGAATAGCAACACCAACAACAGCTTCTTCAACCTCGGA 1140
||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1085 CCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACAACAGCTTCTTCAACCTCGGA 1144
Query 1141 TTCTTTCAAGAAAACACCAAGAACTCGGAGACGACTCTTCCTTCTCTATATAGCACCGAC 1200
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1145 TTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGAC 1204
Query 1201 GTTCTTGTTCATCACTGTGAAGAAAACTTGAACACGGGTTCTAACGTGTCAGCTACGGCA 1260
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1205 GTTCTTGTTCATCACCGTGAAGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCA 1264
Query 1261 CTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGATCCTTCTGCTTTGTTC 1320
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1265 CTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTC 1324
Query 1321 AGAGGCTTAGCTTCTTCGTCCAATTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGA 1380
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGA 1384
Query 1381 CGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTCTAATGAACTCATTAACGGCC 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1385 CGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTCTAATGAACTCATTAGCCGCC 1444
Query 1441 GTTAATGGCGGTGGAGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGA 1500
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 GTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGA 1504
Query 1501 AATATGAGCGGCTCGGATAAGTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGA 1560
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AATATGAGCGGCTCGGACAAGTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGA 1564
Query 1561 AATGTAAATCGCGGTGGTGGTGGTGGT---CGCGGCAGTGGTCGTGGAGGAGTTTCTTTG 1617
||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1565 AATGTAAATCGCGGTGGTGGTGGTGGTGGTCGCGGCAGTGCTCGTGGCGGAGTTTCTTTG 1624
Query 1618 GATGGTGAAGTGAAGTTTCCTGAGCAAAATCATCCATTTGGAAGAGGTTGATAATATCTT 1677
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1625 GATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGTTGATAATATCTT 1684
Query 1678 ATTATTGTATA 1688
|||||||||||
Sbjct 1685 ATTATTGTATA 1695
> AT2G02070.1 | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain
5 | chr2:505487-509425 FORWARD LENGTH=2116
Length=2116
Score = 638 bits (345), Expect = 0.0
Identities = 459/513 (89%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 267 AGCTCCACCACCCAAGAAACG-A-AGAAACCAACCCGGAAAC-CCAAA-TCCTGATGCAG 322
||||||||| | || ||| | | ||||||||||| | ||| ||||| ||| ||||| |
Sbjct 177 AGCTCCACCGCAGAA-AAA-GAAGAGAAACCAACCAAG-AACTCCAAATTCC-GATGCGG 232
Query 323 AAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGATGTAT 382
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 233 AAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGAAGTAT 292
Query 383 GCAACAAAGGATTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCC 442
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 293 GCAACAAAGGGTTTCAAAGAGAACAGAATCTACAACTTCACCGAAGAGGACACAATCTTC 352
Query 443 CATGGAAGCTGAAACAGAAGTCAACCAAAGAAGTGAAGAGGAAAGTATATCTTTGTCCGG 502
|||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 353 CATGGAAGCTCAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGG 412
Query 503 AGCCGACGTGCGTTCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 562
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGCCCTCGTGCGTCCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 472
Query 563 AGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGCGAGAAATGTTCTAAGCGTT 622
| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 473 AACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTT 532
Query 623 ACGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACTTGTGGTACTAAAGAATATCGAT 682
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |
Sbjct 533 ACGCTGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTT 592
Query 683 GTGACTGTGGTAC-CATCTTCTCTAGACGTGATAGTTACATCACACATAGAGCTTTCTGC 741
||||||||||||| | |||||||| | || || |||| |||||||||||||||||||||
Sbjct 593 GTGACTGTGGTACAC-TCTTCTCTCGGCGAGACAGTTTCATCACACATAGAGCTTTCTGT 651
Query 742 GATGCATTGA-TACAAGAGAGTGCAAGAAACCC 773
|| || ||| | ||||||||||| ||| ||||
Sbjct 652 GACGCGTTGGCT-CAAGAGAGTGCGAGACACCC 683
> AT1G14580.1 | Symbols: | C2H2-like zinc finger protein | chr1:4989563-4992732
FORWARD LENGTH=1950
Length=1950
Score = 573 bits (310), Expect = 2e-162
Identities = 467/542 (86%), Gaps = 14/542 (3%)
Strand=Plus/Plus
Query 268 GCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGCAGAAGTG 327
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 401 GCTCCACCACCCAAGAAGCGAAGGAACCAACCCGGAAACCCAAATCCAGATGCTGAAGTG 460
Query 328 GTAGCATTATCTCCAAAGAC-ACTAATGGCTACAAACAGATTCATATGTGATGTATGCAA 386
|||| ||||| |||||||| | ||||||| || ||||| ||| ||||||| || |||||
Sbjct 461 ATAGCGTTATCGCCAAAGACGA-TAATGGCGACGAACAGGTTCCTATGTGAAGTGTGCAA 519
Query 387 CAAAGGATTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCCCATG 446
|||||| || || || ||||| ||||| ||||| ||| | || |||||||| || |||||
Sbjct 520 CAAAGGGTTCCAGAGGGAACAGAATCTGCAGCTCCACAGGAGGGGACACAACCTTCCATG 579
Query 447 GAAGCTGAAACAGAAGT-CAACCAAAGAAGTGAAGAGGAAAGTATATCTTTGTCCGGAGC 505
|||||||||||| |||| ||| |||||| |||| |||||| || || |||||||||||||
Sbjct 580 GAAGCTGAAACAAAAGTCCAA-CAAAGAGGTGAGGAGGAAGGTGTACCTTTGTCCGGAGC 638
Query 506 CGACGTGCGTTCACCATGA-CCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAG 564
| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 639 CCTCGTGCGTCCACCATGACCCCG-CACGTGCTCTCGGAGACCTCACCGGAATCAAGAAG 697
Query 565 CATTATTACCGTAAACATGGCGA-AAAGAAGTGGAAATGCGAGAAATGTTCTAAGCGTTA 623
||||| || || || || || || ||| |||||||| ||||| || || |||||||||||
Sbjct 698 CATTACTATCGGAAGCACGGTGAGAAA-AAGTGGAAGTGCGATAAGTGCTCTAAGCGTTA 756
Query 624 CGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACTTGTGGTACTAAAGAATATCGATG 683
|||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct 757 CGCTGTTCAATCTGATTGGAAAGCTCACTCTAAGACCTGTGGTACCAAAGAGTATCGATG 816
Query 684 TGACTGTGGTACCATCTTCTCTAG-ACGTGATAGTTACATCACACATAGAGCTTTCTGCG 742
|||||||||||||||||||||||| | | || ||||||||||| || || || ||||| |
Sbjct 817 TGACTGTGGTACCATCTTCTCTAGGA-GAGACAGTTACATCACCCACAGGGCATTCTGTG 875
Query 743 ATGCATTGATACAAGAGAGT--GCAAGAAACCCTACCGTGAGCTTTACGTCAATGGCAGC 800
||||| | ||||| | |||| ||||||||||| ||||||||||| ||| ||||||||||
Sbjct 876 ATGCACTCATACA-G-GAGTCAGCAAGAAACCCCACCGTGAGCTTCACGGCAATGGCAGC 933
Query 801 TG 802
||
Sbjct 934 TG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5